Analysis of interatomic Contacts of Structural Units in PDB entry:
7F1B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7F1B entry

There is 1 chain in PDB entry 7F1B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 423
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 7F1B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 30Right-handed alpha
Helix 2
AA2
A
49 52Right-handed 310
Helix 3
AA3
A
72 80Right-handed alpha
Helix 4
AA4
A
89 91Right-handed 310
Helix 5
AA5
A
103 113Right-handed alpha
Helix 6
AA6
A
114 126Right-handed alpha
Helix 7
AA7
A
142 159Right-handed alpha
Helix 8
AA8
A
179 195Right-handed alpha
Helix 9
AA9
A
203 214Right-handed alpha
Helix 10
AB1
A
221 223Right-handed 310
Helix 11
AB2
A
224 237Right-handed alpha
Helix 12
AB3
A
238 241Right-handed 310
Helix 13
AB4
A
249 256Right-handed alpha
Helix 14
AB5
A
274 280Right-handed alpha
Helix 15
AB6
A
282 291Right-handed alpha
Helix 16
AB7
A
292 296Right-handed 310
Helix 17
AB8
A
324 333Right-handed alpha
Helix 18
AB9
A
369 386Right-handed alpha
Helix 19
AC1
A
391 396Right-handed alpha
Helix 20
AC2
A
400 423Right-handed alpha
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There are 3 sheets in PDB entry 7F1B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 95first strand
Strand 2
A
65 69parallel
Strand 3
A
5 11parallel
Strand 4
A
130 138parallel
Strand 5
A
163 170parallel
Strand 6
A
197 202parallel
Strand 7
A
265 271parallel
Strand 8
A
359 367anti-parallel
Strand 9
A
306 315anti-parallel
Strand 10
A
345 346parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 95first strand
Strand 2
A
65 69parallel
Strand 3
A
5 11parallel
Strand 4
A
130 138parallel
Strand 5
A
163 170parallel
Strand 6
A
197 202parallel
Strand 7
A
265 271parallel
Strand 8
A
359 367anti-parallel
Strand 9
A
306 315anti-parallel
Strand 10
A
349 350parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 57first strand
Strand 2
A
60 63anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il