Analysis of interatomic Contacts of Structural Units in PDB entry:
7F1E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7F1E entry

There are 2 chains in PDB entry 7F1E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 15PRO 270
B
 THR 27LYS 271
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 7F1E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 40Right-handed alpha
Helix 2
AA2
A
40 51Right-handed alpha
Helix 3
AA3
A
65 71Right-handed alpha
Helix 4
AA4
A
94 101Right-handed alpha
Helix 5
AA5
A
112 122Right-handed alpha
Helix 6
AA6
A
141 145Right-handed 310
Helix 7
AA7
A
159 163Right-handed 310
Helix 8
AA8
A
167 178Right-handed alpha
Helix 9
AA9
A
194 199Right-handed 310
Helix 10
AB1
A
201 203Right-handed 310
Helix 11
AB2
A
223 234Right-handed alpha
Helix 12
AB3
B
30 40Right-handed alpha
Helix 13
AB4
B
40 51Right-handed alpha
Helix 14
AB5
B
64 74Right-handed alpha
Helix 15
AB6
B
94 101Right-handed alpha
Helix 16
AB7
B
112 121Right-handed alpha
Helix 17
AB8
B
141 145Right-handed 310
Helix 18
AB9
B
159 163Right-handed 310
Helix 19
AC1
B
164 166Right-handed 310
Helix 20
AC2
B
167 178Right-handed alpha
Helix 21
AC3
B
201 203Right-handed 310
Helix 22
AC4
B
223 234Right-handed alpha
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There are 4 sheets in PDB entry 7F1E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 134first strand
Strand 2
A
104 110parallel
Strand 3
A
81 86parallel
Strand 4
A
151 157parallel
Strand 5
A
179 190parallel
Strand 6
A
257 267anti-parallel
Strand 7
A
237 248anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 207first strand
Strand 2
A
210 212anti-parallel
Strand 3
A
218 220anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 134first strand
Strand 2
B
104 110parallel
Strand 3
B
81 86parallel
Strand 4
B
151 157parallel
Strand 5
B
179 190parallel
Strand 6
B
257 267anti-parallel
Strand 7
B
237 248anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
205 207first strand
Strand 2
B
210 212anti-parallel
Strand 3
B
218 220anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il