Analysis of interatomic Contacts of Structural Units in PDB entry:
7F1M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7F1M entry

There are 4 chains in PDB entry 7F1M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 394
R
 U 7 U 12
B
 MET 1ASN 394
S
 U 7 U 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 7F1M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 9Right-handed 310
Helix 2
AA2
A
30 44Right-handed alpha
Helix 3
AA3
A
51 66Right-handed alpha
Helix 4
AA4
A
70 75Right-handed alpha
Helix 5
AA5
A
75 85Right-handed alpha
Helix 6
AA6
A
106 108Right-handed 310
Helix 7
AA7
A
109 116Right-handed alpha
Helix 8
AA8
A
126 138Right-handed alpha
Helix 9
AA9
A
147 164Right-handed alpha
Helix 10
AB1
A
175 189Right-handed alpha
Helix 11
AB2
A
189 203Right-handed alpha
Helix 12
AB3
A
208 220Right-handed alpha
Helix 13
AB4
A
226 236Right-handed alpha
Helix 14
AB5
A
255 270Right-handed alpha
Helix 15
AB6
A
271 276Right-handed 310
Helix 16
AB7
A
278 283Right-handed alpha
Helix 17
AB8
A
286 295Right-handed 310
Helix 18
AB9
A
297 310Right-handed alpha
Helix 19
AC1
A
311 315Right-handed 310
Helix 20
AC2
A
322 349Right-handed alpha
Helix 21
AC3
A
351 394Right-handed alpha
Helix 22
AC4
B
2 9Right-handed 310
Helix 23
AC5
B
30 44Right-handed alpha
Helix 24
AC6
B
51 65Right-handed alpha
Helix 25
AC7
B
75 84Right-handed alpha
Helix 26
AC8
B
98 102Right-handed 310
Helix 27
AC9
B
106 108Right-handed 310
Helix 28
AD1
B
109 118Right-handed alpha
Helix 29
AD2
B
125 127Right-handed 310
Helix 30
AD3
B
128 138Right-handed alpha
Helix 31
AD4
B
146 164Right-handed alpha
Helix 32
AD5
B
175 189Right-handed alpha
Helix 33
AD6
B
189 203Right-handed alpha
Helix 34
AD7
B
208 219Right-handed alpha
Helix 35
AD8
B
226 236Right-handed alpha
Helix 36
AD9
B
247 251Right-handed 310
Helix 37
AE1
B
255 268Right-handed alpha
Helix 38
AE2
B
269 279Right-handed 310
Helix 39
AE3
B
284 291Right-handed 310
Helix 40
AE4
B
295 310Right-handed alpha
Helix 41
AE5
B
311 316Right-handed 310
Helix 42
AE6
B
322 349Right-handed alpha
Helix 43
AE7
B
351 394Right-handed alpha
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There are 4 sheets in PDB entry 7F1M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 27first strand
Strand 2
A
86 92parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 239first strand
Strand 2
A
244 245anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 27first strand
Strand 2
B
86 92parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 239first strand
Strand 2
B
244 245anti-parallel
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