Analysis of interatomic Contacts of Structural Units in PDB entry:
7F1Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7F1Z entry

There are 4 chains in PDB entry 7F1Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
F	PHE 20	GLY 346
A	GLN 12	LEU 394
B	SER 0	ASN 340
D	SER 8	LYS 64

There are 27 helices in PDB entry 7F1Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	F	20	51	Right-handed alpha
Helix 2	AA2	F	51	56	Right-handed alpha
Helix 3	AA3	F	58	88	Right-handed alpha
Helix 4	AA4	F	94	127	Right-handed alpha
Helix 5	AA5	F	127	135	Right-handed alpha
Helix 6	AA6	F	136	161	Right-handed alpha
Helix 7	AA7	F	191	203	Right-handed alpha
Helix 8	AA8	F	203	237	Right-handed alpha
Helix 9	AA9	F	265	299	Right-handed alpha
Helix 10	AB1	F	309	332	Right-handed alpha
Helix 11	AB2	F	334	346	Right-handed alpha
Helix 12	AB3	A	13	39	Right-handed alpha
Helix 13	AB4	A	52	64	Right-handed alpha
Helix 14	AB5	A	233	239	Right-handed 310
Helix 15	AB6	A	265	278	Right-handed alpha
Helix 16	AB7	A	293	304	Right-handed alpha
Helix 17	AB8	A	307	311	Right-handed 310
Helix 18	AB9	A	312	318	Right-handed 310
Helix 19	AC1	A	331	350	Right-handed alpha
Helix 20	AC2	A	372	391	Right-handed alpha
Helix 21	AC3	B	2	25	Right-handed alpha
Helix 22	AC4	B	29	34	Right-handed alpha
Helix 23	AC5	B	35	37	Right-handed 310
Helix 24	AC6	D	9	24	Right-handed alpha
Helix 25	AC7	D	29	44	Right-handed alpha
Helix 26	AC8	D	45	48	Right-handed 310
Helix 27	AC9	D	55	59	Right-handed 310

There are 8 sheets in PDB entry 7F1Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	214	first strand
Strand 2	A	217	223	anti-parallel
Strand 3	A	40	47	parallel
Strand 4	A	243	249	parallel
Strand 5	A	286	292	parallel
Strand 6	A	359	363	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	52	first strand
Strand 2	B	335	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	135	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	175	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	249	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	293	298	anti-parallel
Strand 4	B	304	309	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7F1Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
7F1Z