Analysis of interatomic Contacts of Structural Units in PDB entry:
7F2J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7F2J entry

There are 2 chains in PDB entry 7F2J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 362LEU 478
B
 GLN 363LEU 478
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 7F2J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
426 434Right-handed alpha
Helix 2
AA2
A
447 451Right-handed 310
Helix 3
AA3
B
426 434Right-handed alpha
Helix 4
AA4
B
447 451Right-handed 310
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There are 4 sheets in PDB entry 7F2J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 366first strand
Strand 2
A
372 377anti-parallel
Strand 3
A
441 446anti-parallel
Strand 4
A
467 476anti-parallel
Strand 5
A
391 400anti-parallel
Strand 6
A
406 409anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 366first strand
Strand 2
A
372 377anti-parallel
Strand 3
A
441 446anti-parallel
Strand 4
A
467 476anti-parallel
Strand 5
A
391 400anti-parallel
Strand 6
A
416 419anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
364 366first strand
Strand 2
B
372 377anti-parallel
Strand 3
B
441 446anti-parallel
Strand 4
B
467 477anti-parallel
Strand 5
B
391 400anti-parallel
Strand 6
B
406 409anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
364 366first strand
Strand 2
B
372 377anti-parallel
Strand 3
B
441 446anti-parallel
Strand 4
B
467 477anti-parallel
Strand 5
B
391 400anti-parallel
Strand 6
B
416 419anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il