Analysis of interatomic Contacts of Structural Units in PDB entry:
7F2U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7F2U entry

There are 2 chains in PDB entry 7F2U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 37LEU 358
B
 LYS 36LEU 358
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 7F2U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
64 81Right-handed alpha
Helix 2
AA2
A
89 97Right-handed alpha
Helix 3
AA3
A
106 123Right-handed alpha
Helix 4
AA4
A
131 139Right-handed alpha
Helix 5
AA5
A
149 157Right-handed alpha
Helix 6
AA6
A
158 160Right-handed 310
Helix 7
AA7
A
161 163Right-handed 310
Helix 8
AA8
A
185 204Right-handed alpha
Helix 9
AA9
A
296 309Right-handed alpha
Helix 10
AB1
A
310 321Right-handed alpha
Helix 11
AB2
A
340 343Right-handed 310
Helix 12
AB3
B
63 81Right-handed alpha
Helix 13
AB4
B
89 97Right-handed alpha
Helix 14
AB5
B
106 123Right-handed alpha
Helix 15
AB6
B
131 139Right-handed alpha
Helix 16
AB7
B
149 157Right-handed alpha
Helix 17
AB8
B
158 160Right-handed 310
Helix 18
AB9
B
161 163Right-handed 310
Helix 19
AC1
B
185 204Right-handed alpha
Helix 20
AC2
B
296 310Right-handed alpha
Helix 21
AC3
B
310 321Right-handed alpha
Helix 22
AC4
B
340 343Right-handed 310
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There are 8 sheets in PDB entry 7F2U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 48first strand
Strand 2
A
51 57anti-parallel
Strand 3
A
209 213anti-parallel
Strand 4
A
216 220anti-parallel
Strand 5
A
252 258anti-parallel
Strand 6
A
287 294anti-parallel
Strand 7
A
325 331anti-parallel
Strand 8
A
335 338anti-parallel
Strand 9
A
354 355parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 104first strand
Strand 2
A
173 176anti-parallel
Strand 3
A
165 168anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 234first strand
Strand 2
A
243 249anti-parallel
Strand 3
A
347 348anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 266first strand
Strand 2
A
269 272anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 48first strand
Strand 2
B
51 59anti-parallel
Strand 3
B
209 212anti-parallel
Strand 4
B
216 220anti-parallel
Strand 5
B
252 258anti-parallel
Strand 6
B
287 294anti-parallel
Strand 7
B
325 331anti-parallel
Strand 8
B
335 338anti-parallel
Strand 9
B
354 355parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 104first strand
Strand 2
B
173 176anti-parallel
Strand 3
B
165 168anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 234first strand
Strand 2
B
243 249anti-parallel
Strand 3
B
347 348anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
263 266first strand
Strand 2
B
269 272anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il