Analysis of interatomic Contacts of Structural Units in PDB entry:
7F38

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7F38 entry

There are 9 chains in PDB entry 7F38 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 3	GLN 365
B	LEU 3	GLN 365
C	LEU 3	GLN 365
D	LEU 3	GLN 365
E	LEU 3	GLN 365
F	LEU 3	GLN 365
G	LEU 3	GLN 365
H	LEU 3	GLN 365
I	LEU 3	GLN 365

There are 91 helices in PDB entry 7F38. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	33	Right-handed alpha
Helix 2	AA2	A	93	103	Right-handed alpha
Helix 3	AA3	A	111	134	Right-handed alpha
Helix 4	AA4	A	149	154	Right-handed alpha
Helix 5	AA5	A	156	161	Right-handed alpha
Helix 6	AA6	A	173	177	Right-handed 310
Helix 7	AA7	A	193	207	Right-handed alpha
Helix 8	AA8	A	212	216	Right-handed 310
Helix 9	AA9	A	231	240	Right-handed alpha
Helix 10	AB1	A	352	356	Right-handed alpha
Helix 11	AB2	B	3	7	Right-handed 310
Helix 12	AB3	B	8	12	Right-handed 310
Helix 13	AB4	B	28	33	Right-handed alpha
Helix 14	AB5	B	93	100	Right-handed alpha
Helix 15	AB6	B	106	111	Right-handed alpha
Helix 16	AB7	B	111	132	Right-handed alpha
Helix 17	AB8	B	156	161	Right-handed alpha
Helix 18	AB9	B	164	168	Right-handed 310
Helix 19	AC1	B	193	206	Right-handed alpha
Helix 20	AC2	B	225	231	Right-handed alpha
Helix 21	AC3	B	232	240	Right-handed alpha
Helix 22	AC4	B	352	356	Right-handed alpha
Helix 23	AC5	C	28	33	Right-handed alpha
Helix 24	AC6	C	94	103	Right-handed alpha
Helix 25	AC7	C	111	132	Right-handed alpha
Helix 26	AC8	C	156	162	Right-handed alpha
Helix 27	AC9	C	173	177	Right-handed 310
Helix 28	AD1	C	193	206	Right-handed alpha
Helix 29	AD2	C	231	240	Right-handed alpha
Helix 30	AD3	C	284	286	Right-handed 310
Helix 31	AD4	C	352	357	Right-handed alpha
Helix 32	AD5	D	8	12	Right-handed 310
Helix 33	AD6	D	28	33	Right-handed alpha
Helix 34	AD7	D	94	102	Right-handed alpha
Helix 35	AD8	D	111	132	Right-handed alpha
Helix 36	AD9	D	173	177	Right-handed 310
Helix 37	AE1	D	193	207	Right-handed alpha
Helix 38	AE2	D	284	286	Right-handed 310
Helix 39	AE3	D	352	356	Right-handed alpha
Helix 40	AE4	E	8	12	Right-handed 310
Helix 41	AE5	E	28	33	Right-handed alpha
Helix 42	AE6	E	94	103	Right-handed alpha
Helix 43	AE7	E	106	111	Right-handed alpha
Helix 44	AE8	E	111	132	Right-handed alpha
Helix 45	AE9	E	157	161	Right-handed 310
Helix 46	AF1	E	173	177	Right-handed 310
Helix 47	AF2	E	193	207	Right-handed alpha
Helix 48	AF3	E	231	240	Right-handed alpha
Helix 49	AF4	E	284	286	Right-handed 310
Helix 50	AF5	E	352	356	Right-handed alpha
Helix 51	AF6	F	8	12	Right-handed 310
Helix 52	AF7	F	28	33	Right-handed alpha
Helix 53	AF8	F	93	104	Right-handed alpha
Helix 54	AF9	F	111	134	Right-handed alpha
Helix 55	AG1	F	156	161	Right-handed alpha
Helix 56	AG2	F	173	177	Right-handed 310
Helix 57	AG3	F	193	206	Right-handed alpha
Helix 58	AG4	F	284	286	Right-handed 310
Helix 59	AG5	F	293	297	Right-handed 310
Helix 60	AG6	F	352	356	Right-handed alpha
Helix 61	AG7	G	28	33	Right-handed alpha
Helix 62	AG8	G	93	103	Right-handed alpha
Helix 63	AG9	G	111	132	Right-handed alpha
Helix 64	AH1	G	156	161	Right-handed alpha
Helix 65	AH2	G	173	177	Right-handed 310
Helix 66	AH3	G	193	206	Right-handed alpha
Helix 67	AH4	G	226	231	Right-handed alpha
Helix 68	AH5	G	231	238	Right-handed alpha
Helix 69	AH6	G	284	286	Right-handed 310
Helix 70	AH7	G	293	297	Right-handed 310
Helix 71	AH8	G	352	356	Right-handed alpha
Helix 72	AH9	H	28	33	Right-handed alpha
Helix 73	AI1	H	94	103	Right-handed alpha
Helix 74	AI2	H	111	132	Right-handed alpha
Helix 75	AI3	H	147	153	Right-handed alpha
Helix 76	AI4	H	156	161	Right-handed alpha
Helix 77	AI5	H	173	177	Right-handed 310
Helix 78	AI6	H	193	204	Right-handed alpha
Helix 79	AI7	H	226	231	Right-handed alpha
Helix 80	AI8	H	284	286	Right-handed 310
Helix 81	AI9	H	352	356	Right-handed alpha
Helix 82	AJ1	I	28	35	Right-handed alpha
Helix 83	AJ2	I	93	104	Right-handed alpha
Helix 84	AJ3	I	111	131	Right-handed alpha
Helix 85	AJ4	I	156	161	Right-handed alpha
Helix 86	AJ5	I	173	177	Right-handed 310
Helix 87	AJ6	I	193	207	Right-handed alpha
Helix 88	AJ7	I	226	231	Right-handed alpha
Helix 89	AJ8	I	239	243	Right-handed 310
Helix 90	AJ9	I	254	256	Right-handed 310
Helix 91	AK1	I	352	356	Right-handed alpha

There are 45 sheets in PDB entry 7F38. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	41	first strand
Strand 2	A	286	291	parallel
Strand 3	A	346	350	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	80	first strand
Strand 2	A	45	51	anti-parallel
Strand 3	B	16	20	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	61	first strand
Strand 2	B	84	90	anti-parallel
Strand 3	B	340	344	anti-parallel
Strand 4	B	320	328	anti-parallel
Strand 5	B	306	309	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	90	first strand
Strand 2	A	340	343	anti-parallel
Strand 3	A	319	329	anti-parallel
Strand 4	A	306	310	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	223	first strand
Strand 2	A	278	282	anti-parallel
Strand 3	A	357	360	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	41	first strand
Strand 2	B	288	291	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	51	first strand
Strand 2	B	74	80	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	222	first strand
Strand 2	B	278	282	anti-parallel
Strand 3	B	357	360	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	20	first strand
Strand 2	H	45	53	parallel
Strand 3	H	73	80	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	41	first strand
Strand 2	C	289	291	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	53	first strand
Strand 2	C	73	80	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	303	309	first strand
Strand 2	C	320	329	anti-parallel
Strand 3	C	337	344	anti-parallel
Strand 4	C	84	93	anti-parallel
Strand 5	H	58	61	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	165	first strand
Strand 2	C	168	169	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	219	223	first strand
Strand 2	C	278	282	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	41	first strand
Strand 2	D	289	291	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	74	80	first strand
Strand 2	D	45	51	anti-parallel
Strand 3	E	16	20	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	61	first strand
Strand 2	E	84	90	anti-parallel
Strand 3	E	340	344	anti-parallel
Strand 4	E	324	328	anti-parallel
Strand 5	E	306	307	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	93	first strand
Strand 2	D	337	343	anti-parallel
Strand 3	D	320	328	anti-parallel
Strand 4	D	306	309	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	164	165	first strand
Strand 2	D	168	169	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	219	222	first strand
Strand 2	D	279	282	anti-parallel
Strand 3	D	357	358	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	41	first strand
Strand 2	E	289	291	parallel
Strand 3	E	346	347	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	51	first strand
Strand 2	E	74	80	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	164	165	first strand
Strand 2	E	168	169	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	219	223	first strand
Strand 2	E	278	282	anti-parallel
Strand 3	E	357	358	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	38	41	first strand
Strand 2	F	288	291	parallel
Strand 3	F	347	348	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	74	80	first strand
Strand 2	F	45	51	anti-parallel
Strand 3	G	16	20	parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	58	60	first strand
Strand 2	G	85	90	anti-parallel
Strand 3	G	340	343	anti-parallel
Strand 4	G	320	329	anti-parallel
Strand 5	G	306	309	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	89	90	first strand
Strand 2	F	340	343	anti-parallel
Strand 3	F	320	329	anti-parallel
Strand 4	F	306	309	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	164	165	first strand
Strand 2	F	168	169	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	219	223	first strand
Strand 2	F	278	282	anti-parallel
Strand 3	F	357	360	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	242	244	first strand
Strand 2	G	242	246	parallel
Strand 3	H	244	246	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	39	41	first strand
Strand 2	G	289	291	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	51	first strand
Strand 2	G	74	80	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	60	61	first strand
Strand 2	H	84	85	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	164	165	first strand
Strand 2	G	168	169	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	219	222	first strand
Strand 2	G	278	282	anti-parallel
Strand 3	G	357	360	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	39	41	first strand
Strand 2	H	289	291	parallel
Strand 3	H	346	347	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	88	90	first strand
Strand 2	H	340	343	anti-parallel
Strand 3	H	320	328	anti-parallel
Strand 4	H	306	309	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	164	165	first strand
Strand 2	H	168	169	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	219	223	first strand
Strand 2	H	278	282	anti-parallel
Strand 3	H	357	359	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	39	41	first strand
Strand 2	I	286	291	parallel
Strand 3	I	347	350	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	45	53	first strand
Strand 2	I	73	80	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	88	90	first strand
Strand 2	I	340	343	anti-parallel
Strand 3	I	324	329	anti-parallel
Strand 4	I	306	307	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	164	165	first strand
Strand 2	I	168	169	anti-parallel

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There are 5 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	258	261	first strand
Strand 2	I	266	269	anti-parallel
Strand 3	I	219	223	parallel
Strand 4	I	278	282	anti-parallel
Strand 5	I	357	359	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7F38

Analysis of interatomic Contacts of Structural Units in PDB entry:
7F38