Analysis of interatomic Contacts of Structural Units in PDB entry:
7F3F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7F3F entry

There are 8 chains in PDB entry 7F3F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	ASP 495
B	ALA 2	ASP 495
D	ALA 2	ASP 495
G	ALA 2	ASP 495
E	PRO 36	MET 216
H	PRO 36	MET 216
J	PRO 36	MET 216
L	PRO 36	MET 216

There are125 helices in PDB entry 7F3F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	16	Right-handed alpha
Helix 2	AA2	A	17	23	Right-handed 310
Helix 3	AA3	A	56	61	Right-handed alpha
Helix 4	AA4	A	70	74	Right-handed 310
Helix 5	AA5	A	91	101	Right-handed alpha
Helix 6	AA6	A	111	123	Right-handed alpha
Helix 7	AA7	A	130	133	Right-handed 310
Helix 8	AA8	A	134	152	Right-handed alpha
Helix 9	AA9	A	166	177	Right-handed alpha
Helix 10	AB1	A	182	207	Right-handed alpha
Helix 11	AB2	A	227	249	Right-handed alpha
Helix 12	AB3	A	253	260	Right-handed alpha
Helix 13	AB4	A	260	282	Right-handed alpha
Helix 14	AB5	A	288	297	Right-handed alpha
Helix 15	AB6	A	298	305	Right-handed 310
Helix 16	AB7	A	307	320	Right-handed alpha
Helix 17	AB8	A	320	346	Right-handed alpha
Helix 18	AB9	A	356	369	Right-handed alpha
Helix 19	AC1	A	380	400	Right-handed alpha
Helix 20	AC2	A	400	450	Right-handed alpha
Helix 21	AC3	A	473	489	Right-handed alpha
Helix 22	AC4	B	8	16	Right-handed alpha
Helix 23	AC5	B	17	23	Right-handed 310
Helix 24	AC6	B	56	61	Right-handed alpha
Helix 25	AC7	B	70	74	Right-handed 310
Helix 26	AC8	B	91	101	Right-handed alpha
Helix 27	AC9	B	111	123	Right-handed alpha
Helix 28	AD1	B	130	133	Right-handed 310
Helix 29	AD2	B	134	152	Right-handed alpha
Helix 30	AD3	B	166	177	Right-handed alpha
Helix 31	AD4	B	182	207	Right-handed alpha
Helix 32	AD5	B	228	249	Right-handed alpha
Helix 33	AD6	B	253	260	Right-handed alpha
Helix 34	AD7	B	260	282	Right-handed alpha
Helix 35	AD8	B	288	296	Right-handed alpha
Helix 36	AD9	B	297	305	Right-handed 310
Helix 37	AE1	B	307	320	Right-handed alpha
Helix 38	AE2	B	320	346	Right-handed alpha
Helix 39	AE3	B	356	369	Right-handed alpha
Helix 40	AE4	B	380	400	Right-handed alpha
Helix 41	AE5	B	400	450	Right-handed alpha
Helix 42	AE6	B	473	489	Right-handed alpha
Helix 43	AE7	D	8	16	Right-handed alpha
Helix 44	AE8	D	17	23	Right-handed 310
Helix 45	AE9	D	56	61	Right-handed alpha
Helix 46	AF1	D	70	74	Right-handed 310
Helix 47	AF2	D	91	101	Right-handed alpha
Helix 48	AF3	D	111	123	Right-handed alpha
Helix 49	AF4	D	130	133	Right-handed 310
Helix 50	AF5	D	134	152	Right-handed alpha
Helix 51	AF6	D	166	177	Right-handed alpha
Helix 52	AF7	D	182	207	Right-handed alpha
Helix 53	AF8	D	227	249	Right-handed alpha
Helix 54	AF9	D	253	260	Right-handed alpha
Helix 55	AG1	D	260	282	Right-handed alpha
Helix 56	AG2	D	288	297	Right-handed alpha
Helix 57	AG3	D	298	305	Right-handed 310
Helix 58	AG4	D	307	320	Right-handed alpha
Helix 59	AG5	D	320	346	Right-handed alpha
Helix 60	AG6	D	356	369	Right-handed alpha
Helix 61	AG7	D	380	400	Right-handed alpha
Helix 62	AG8	D	400	450	Right-handed alpha
Helix 63	AG9	D	473	488	Right-handed alpha
Helix 64	AH1	G	8	16	Right-handed alpha
Helix 65	AH2	G	17	23	Right-handed 310
Helix 66	AH3	G	56	61	Right-handed alpha
Helix 67	AH4	G	70	74	Right-handed 310
Helix 68	AH5	G	91	101	Right-handed alpha
Helix 69	AH6	G	111	123	Right-handed alpha
Helix 70	AH7	G	130	133	Right-handed 310
Helix 71	AH8	G	134	152	Right-handed alpha
Helix 72	AH9	G	166	177	Right-handed alpha
Helix 73	AI1	G	182	207	Right-handed alpha
Helix 74	AI2	G	227	249	Right-handed alpha
Helix 75	AI3	G	253	260	Right-handed alpha
Helix 76	AI4	G	260	282	Right-handed alpha
Helix 77	AI5	G	288	297	Right-handed alpha
Helix 78	AI6	G	298	305	Right-handed 310
Helix 79	AI7	G	307	320	Right-handed alpha
Helix 80	AI8	G	320	346	Right-handed alpha
Helix 81	AI9	G	356	369	Right-handed alpha
Helix 82	AJ1	G	380	400	Right-handed alpha
Helix 83	AJ2	G	400	417	Right-handed alpha
Helix 84	AJ3	G	418	450	Right-handed alpha
Helix 85	AJ4	G	473	489	Right-handed alpha
Helix 86	AJ5	E	49	64	Right-handed alpha
Helix 87	AJ6	E	71	82	Right-handed alpha
Helix 88	AJ7	E	87	99	Right-handed alpha
Helix 89	AJ8	E	100	103	Right-handed 310
Helix 90	AJ9	E	108	121	Right-handed alpha
Helix 91	AK1	E	122	135	Right-handed alpha
Helix 92	AK2	E	147	157	Right-handed alpha
Helix 93	AK3	E	169	180	Right-handed alpha
Helix 94	AK4	E	192	202	Right-handed alpha
Helix 95	AK5	E	202	210	Right-handed alpha
Helix 96	AK6	H	49	64	Right-handed alpha
Helix 97	AK7	H	71	82	Right-handed alpha
Helix 98	AK8	H	87	99	Right-handed alpha
Helix 99	AK9	H	100	103	Right-handed 310
Helix 100	AL1	H	108	121	Right-handed alpha
Helix 101	AL2	H	122	135	Right-handed alpha
Helix 102	AL3	H	147	157	Right-handed alpha
Helix 103	AL4	H	169	180	Right-handed alpha
Helix 104	AL5	H	192	202	Right-handed alpha
Helix 105	AL6	H	202	210	Right-handed alpha
Helix 106	AL7	J	49	64	Right-handed alpha
Helix 107	AL8	J	71	82	Right-handed alpha
Helix 108	AL9	J	87	99	Right-handed alpha
Helix 109	AM1	J	100	103	Right-handed 310
Helix 110	AM2	J	108	121	Right-handed alpha
Helix 111	AM3	J	122	135	Right-handed alpha
Helix 112	AM4	J	147	157	Right-handed alpha
Helix 113	AM5	J	169	180	Right-handed alpha
Helix 114	AM6	J	192	202	Right-handed alpha
Helix 115	AM7	J	202	210	Right-handed alpha
Helix 116	AM8	L	49	64	Right-handed alpha
Helix 117	AM9	L	71	82	Right-handed alpha
Helix 118	AN1	L	87	99	Right-handed alpha
Helix 119	AN2	L	100	103	Right-handed 310
Helix 120	AN3	L	108	121	Right-handed alpha
Helix 121	AN4	L	122	135	Right-handed alpha
Helix 122	AN5	L	147	157	Right-handed alpha
Helix 123	AN6	L	169	180	Right-handed alpha
Helix 124	AN7	L	192	202	Right-handed alpha
Helix 125	AN8	L	202	210	Right-handed alpha

There are 8 sheets in PDB entry 7F3F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	55	first strand
Strand 2	A	42	47	anti-parallel
Strand 3	A	82	85	parallel
Strand 4	A	76	77	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	55	first strand
Strand 2	B	42	47	anti-parallel
Strand 3	B	82	85	parallel
Strand 4	B	76	77	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	55	first strand
Strand 2	D	42	47	anti-parallel
Strand 3	D	82	85	parallel
Strand 4	D	76	77	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	50	55	first strand
Strand 2	G	42	47	anti-parallel
Strand 3	G	82	85	parallel
Strand 4	G	76	77	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	68	70	first strand
Strand 2	E	105	107	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	68	70	first strand
Strand 2	H	105	107	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	68	70	first strand
Strand 2	J	105	107	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	68	70	first strand
Strand 2	L	105	107	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7F3F

Analysis of interatomic Contacts of Structural Units in PDB entry:
7F3F