Analysis of interatomic Contacts of Structural Units in PDB entry:
7F3I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7F3I entry

There are 7 chains in PDB entry 7F3I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 85ARG 177
B
 G 1 U 2
B
 U 4 U 4
C
 LYS 87ARG 177
D
 G 1 U 2
D
 U 4 U 4
E
 LYS 87ARG 177
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 7F3I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
124 126Right-handed 310
Helix 2
AA2
A
162 166Right-handed 310
Helix 3
AA3
C
124 126Right-handed 310
Helix 4
AA4
C
162 166Right-handed 310
Helix 5
AA5
E
124 126Right-handed 310
Helix 6
AA6
E
162 166Right-handed 310
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There are 3 sheets in PDB entry 7F3I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 102first strand
Strand 2
A
107 112anti-parallel
Strand 3
A
118 122anti-parallel
Strand 4
A
155 161parallel
Strand 5
A
143 150anti-parallel
Strand 6
A
89 102anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
89 102first strand
Strand 2
C
107 112anti-parallel
Strand 3
C
118 122anti-parallel
Strand 4
C
154 161parallel
Strand 5
C
143 151anti-parallel
Strand 6
C
89 102anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
89 102first strand
Strand 2
E
107 112anti-parallel
Strand 3
E
118 122anti-parallel
Strand 4
E
155 161parallel
Strand 5
E
143 150anti-parallel
Strand 6
E
89 102anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il