Analysis of interatomic Contacts of Structural Units in PDB entry:
7F4C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7F4C entry

There are 2 chains in PDB entry 7F4C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 304
B
 MET 1LEU 304
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 7F4C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 21Right-handed alpha
Helix 2
AA2
A
24 28Right-handed 310
Helix 3
AA3
A
56 65Right-handed alpha
Helix 4
AA4
A
82 93Right-handed alpha
Helix 5
AA5
A
102 120Right-handed alpha
Helix 6
AA6
A
125 129Right-handed 310
Helix 7
AA7
A
135 141Right-handed alpha
Helix 8
AA8
A
155 167Right-handed alpha
Helix 9
AA9
A
170 181Right-handed alpha
Helix 10
AB1
A
188 193Right-handed alpha
Helix 11
AB2
A
194 208Right-handed alpha
Helix 12
AB3
A
214 218Right-handed 310
Helix 13
AB4
A
284 301Right-handed alpha
Helix 14
AB5
B
9 21Right-handed alpha
Helix 15
AB6
B
24 28Right-handed 310
Helix 16
AB7
B
56 65Right-handed alpha
Helix 17
AB8
B
82 93Right-handed alpha
Helix 18
AB9
B
102 120Right-handed alpha
Helix 19
AC1
B
125 129Right-handed 310
Helix 20
AC2
B
135 141Right-handed alpha
Helix 21
AC3
B
155 162Right-handed alpha
Helix 22
AC4
B
172 181Right-handed alpha
Helix 23
AC5
B
188 193Right-handed alpha
Helix 24
AC6
B
194 209Right-handed alpha
Helix 25
AC7
B
214 218Right-handed 310
Helix 26
AC8
B
284 301Right-handed alpha
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There are 3 sheets in PDB entry 7F4C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 42first strand
Strand 2
A
31 37anti-parallel
Strand 3
A
2 6parallel
Strand 4
A
68 71parallel
Strand 5
A
96 99parallel
Strand 6
A
123 124parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 220first strand
Strand 2
A
244 250parallel
Strand 3
A
233 240anti-parallel
Strand 4
A
147 153anti-parallel
Strand 5
A
264 271anti-parallel
Strand 6
A
275 281anti-parallel
Strand 7
B
275 281anti-parallel
Strand 8
B
264 271anti-parallel
Strand 9
B
147 153anti-parallel
Strand 10
B
234 240anti-parallel
Strand 11
B
244 249anti-parallel
Strand 12
B
219 220parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 42first strand
Strand 2
B
31 37anti-parallel
Strand 3
B
2 6parallel
Strand 4
B
68 71parallel
Strand 5
B
96 99parallel
Strand 6
B
123 124parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il