Analysis of interatomic Contacts of Structural Units in PDB entry:
7F4L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7F4L entry

There are 6 chains in PDB entry 7F4L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 PRO 11GLN 140
C
 ASP 127LEU 372
D
 ASP 126LEU 372
E
 ALA 147GLU 183
F
 LYS 160GLN 184
A
 PRO 11GLN 139
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 33 helices in PDB entry 7F4L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
13 26Right-handed alpha
Helix 2
AA2
B
38 44Right-handed 310
Helix 3
AA3
B
51 66Right-handed alpha
Helix 4
AA4
B
69 79Right-handed alpha
Helix 5
AA5
B
83 95Right-handed alpha
Helix 6
AA6
B
100 104Right-handed 310
Helix 7
AA7
B
109 128Right-handed alpha
Helix 8
AA8
C
128 132Right-handed 310
Helix 9
AA9
C
135 166Right-handed alpha
Helix 10
AB1
C
188 200Right-handed alpha
Helix 11
AB2
C
231 237Right-handed alpha
Helix 12
AB3
C
239 243Right-handed 310
Helix 13
AB4
C
254 256Right-handed 310
Helix 14
AB5
C
257 268Right-handed alpha
Helix 15
AB6
C
336 346Right-handed alpha
Helix 16
AB7
C
357 361Right-handed 310
Helix 17
AB8
D
135 166Right-handed alpha
Helix 18
AB9
D
187 200Right-handed alpha
Helix 19
AC1
D
231 238Right-handed alpha
Helix 20
AC2
D
239 244Right-handed alpha
Helix 21
AC3
D
254 256Right-handed 310
Helix 22
AC4
D
257 268Right-handed alpha
Helix 23
AC5
D
336 346Right-handed alpha
Helix 24
AC6
E
152 159Right-handed alpha
Helix 25
AC7
E
162 182Right-handed alpha
Helix 26
AC8
F
162 184Right-handed alpha
Helix 27
AC9
A
13 26Right-handed alpha
Helix 28
AD1
A
38 44Right-handed 310
Helix 29
AD2
A
51 66Right-handed alpha
Helix 30
AD3
A
69 79Right-handed alpha
Helix 31
AD4
A
83 95Right-handed alpha
Helix 32
AD5
A
100 104Right-handed 310
Helix 33
AD6
A
109 128Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 7F4L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 131first strand
Strand 2
B
134 135anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
177 180first strand
Strand 2
C
365 369parallel
Strand 3
C
351 354parallel
Strand 4
C
205 208parallel
Strand 5
C
248 253parallel
Strand 6
C
300 306anti-parallel
Strand 7
C
271 279anti-parallel
Strand 8
C
323 325parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
177 180first strand
Strand 2
D
365 369parallel
Strand 3
D
351 354parallel
Strand 4
D
205 208parallel
Strand 5
D
247 253parallel
Strand 6
D
300 307anti-parallel
Strand 7
D
271 278anti-parallel
Strand 8
D
323 324parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 131first strand
Strand 2
A
134 135anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il