Analysis of interatomic Contacts of Structural Units in PDB entry:
7F4P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7F4P entry

There are 2 chains in PDB entry 7F4P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 PRO 11GLN 139
A
 GLN 140LEU 372
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 7F4P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
13 26Right-handed alpha
Helix 2
AA2
B
27 31Right-handed 310
Helix 3
AA3
B
38 43Right-handed alpha
Helix 4
AA4
B
51 65Right-handed alpha
Helix 5
AA5
B
69 78Right-handed alpha
Helix 6
AA6
B
83 95Right-handed alpha
Helix 7
AA7
B
109 127Right-handed alpha
Helix 8
AA8
A
142 166Right-handed alpha
Helix 9
AA9
A
187 199Right-handed alpha
Helix 10
AB1
A
231 237Right-handed alpha
Helix 11
AB2
A
239 243Right-handed 310
Helix 12
AB3
A
254 256Right-handed 310
Helix 13
AB4
A
257 268Right-handed alpha
Helix 14
AB5
A
336 346Right-handed alpha
Helix 15
AB6
A
357 361Right-handed 310
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There are 2 sheets in PDB entry 7F4P. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 131first strand
Strand 2
B
134 135anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 179first strand
Strand 2
A
365 368parallel
Strand 3
A
351 354parallel
Strand 4
A
205 208parallel
Strand 5
A
247 253parallel
Strand 6
A
299 307anti-parallel
Strand 7
A
271 279anti-parallel
Strand 8
A
323 324parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il