Analysis of interatomic Contacts of Structural Units in PDB entry:
7F4S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7F4S entry

There are 6 chains in PDB entry 7F4S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 183LEU 372
B
 ASP 182LEU 372
C
 SER 181LEU 372
D
 ASP 66LYS 302
E
 LYS 67GLU 300
F
 VAL 68GLU 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 7F4S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
188 200Right-handed alpha
Helix 2
AA2
A
231 237Right-handed alpha
Helix 3
AA3
A
239 244Right-handed alpha
Helix 4
AA4
A
257 268Right-handed alpha
Helix 5
AA5
A
336 346Right-handed alpha
Helix 6
AA6
B
187 200Right-handed alpha
Helix 7
AA7
B
231 237Right-handed alpha
Helix 8
AA8
B
239 244Right-handed alpha
Helix 9
AA9
B
257 268Right-handed alpha
Helix 10
AB1
B
336 346Right-handed alpha
Helix 11
AB2
C
188 200Right-handed alpha
Helix 12
AB3
C
231 237Right-handed alpha
Helix 13
AB4
C
239 244Right-handed alpha
Helix 14
AB5
C
254 257Right-handed 310
Helix 15
AB6
C
258 268Right-handed alpha
Helix 16
AB7
C
336 346Right-handed alpha
Helix 17
AB8
C
357 361Right-handed 310
Helix 18
AB9
D
69 76Right-handed alpha
Helix 19
AC1
D
151 161Right-handed alpha
Helix 20
AC2
D
174 179Right-handed alpha
Helix 21
AC3
D
190 194Right-handed alpha
Helix 22
AC4
D
194 202Right-handed alpha
Helix 23
AC5
D
265 276Right-handed alpha
Helix 24
AC6
E
69 79Right-handed alpha
Helix 25
AC7
E
125 129Right-handed 310
Helix 26
AC8
E
130 135Right-handed alpha
Helix 27
AC9
E
152 160Right-handed alpha
Helix 28
AD1
E
174 179Right-handed alpha
Helix 29
AD2
E
202 208Right-handed alpha
Helix 30
AD3
E
265 276Right-handed alpha
Helix 31
AD4
F
69 78Right-handed alpha
Helix 32
AD5
F
124 129Right-handed 310
Helix 33
AD6
F
130 135Right-handed 310
Helix 34
AD7
F
152 160Right-handed alpha
Helix 35
AD8
F
176 184Right-handed alpha
Helix 36
AD9
F
194 202Right-handed alpha
Helix 37
AE1
F
203 208Right-handed alpha
Helix 38
AE2
F
265 269Right-handed 310
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There are 9 sheets in PDB entry 7F4S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 324first strand
Strand 2
A
271 279parallel
Strand 3
A
299 307anti-parallel
Strand 4
A
247 253anti-parallel
Strand 5
A
205 208parallel
Strand 6
A
351 354parallel
Strand 7
A
365 368parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
271 274first strand
Strand 2
B
299 306anti-parallel
Strand 3
B
278 279anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
271 274first strand
Strand 2
B
299 306anti-parallel
Strand 3
B
248 253anti-parallel
Strand 4
B
205 208parallel
Strand 5
B
351 354parallel
Strand 6
B
365 368parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
320 321first strand
Strand 2
F
220 221parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
323 324first strand
Strand 2
C
271 279parallel
Strand 3
C
299 307anti-parallel
Strand 4
C
247 253anti-parallel
Strand 5
C
205 208parallel
Strand 6
C
351 354parallel
Strand 7
C
365 368parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
95 99first strand
Strand 2
D
295 300parallel
Strand 3
D
281 284parallel
Strand 4
D
113 118parallel
Strand 5
D
135 145parallel
Strand 6
D
224 231anti-parallel
Strand 7
D
163 173anti-parallel
Strand 8
D
251 254parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
163 164first strand
Strand 2
E
229 232anti-parallel
Strand 3
E
139 142anti-parallel
Strand 4
E
115 118parallel
Strand 5
E
281 284parallel
Strand 6
E
295 298parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
168 171first strand
Strand 2
E
224 227anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
140 145first strand
Strand 2
F
224 231anti-parallel
Strand 3
F
163 171anti-parallel
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