Analysis of interatomic Contacts of Structural Units in PDB entry:
7F4T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7F4T entry

There are 8 chains in PDB entry 7F4T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 140	LEU 372
E	GLN 140	LEU 372
H	GLN 140	LEU 372
K	GLN 140	LEU 372
B	ILE 4	VAL 128
D	ILE 4	VAL 128
G	SER 5	VAL 128
J	SER 5	GLN 40

There are 61 helices in PDB entry 7F4T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	142	164	Right-handed alpha
Helix 2	AA2	A	165	167	Right-handed 310
Helix 3	AA3	A	189	199	Right-handed alpha
Helix 4	AA4	A	231	237	Right-handed alpha
Helix 5	AA5	A	239	244	Right-handed alpha
Helix 6	AA6	A	254	256	Right-handed 310
Helix 7	AA7	A	257	268	Right-handed alpha
Helix 8	AA8	A	336	346	Right-handed alpha
Helix 9	AA9	A	357	361	Right-handed 310
Helix 10	AB1	E	142	166	Right-handed alpha
Helix 11	AB2	E	187	199	Right-handed alpha
Helix 12	AB3	E	231	238	Right-handed alpha
Helix 13	AB4	E	239	244	Right-handed alpha
Helix 14	AB5	E	254	256	Right-handed 310
Helix 15	AB6	E	257	268	Right-handed alpha
Helix 16	AB7	E	336	346	Right-handed alpha
Helix 17	AB8	E	357	361	Right-handed 310
Helix 18	AB9	H	142	166	Right-handed alpha
Helix 19	AC1	H	187	199	Right-handed alpha
Helix 20	AC2	H	231	237	Right-handed alpha
Helix 21	AC3	H	239	244	Right-handed alpha
Helix 22	AC4	H	254	256	Right-handed 310
Helix 23	AC5	H	257	266	Right-handed alpha
Helix 24	AC6	H	336	346	Right-handed alpha
Helix 25	AC7	H	357	361	Right-handed 310
Helix 26	AC8	K	142	166	Right-handed alpha
Helix 27	AC9	K	187	199	Right-handed alpha
Helix 28	AD1	K	231	237	Right-handed alpha
Helix 29	AD2	K	239	244	Right-handed alpha
Helix 30	AD3	K	254	256	Right-handed 310
Helix 31	AD4	K	257	268	Right-handed alpha
Helix 32	AD5	K	336	346	Right-handed alpha
Helix 33	AD6	K	357	361	Right-handed 310
Helix 34	AD7	B	5	18	Right-handed alpha
Helix 35	AD8	B	30	36	Right-handed alpha
Helix 36	AD9	B	37	41	Right-handed 310
Helix 37	AE1	B	43	58	Right-handed alpha
Helix 38	AE2	B	61	68	Right-handed alpha
Helix 39	AE3	B	77	87	Right-handed alpha
Helix 40	AE4	B	102	118	Right-handed alpha
Helix 41	AE5	D	5	18	Right-handed alpha
Helix 42	AE6	D	31	36	Right-handed alpha
Helix 43	AE7	D	43	52	Right-handed alpha
Helix 44	AE8	D	53	57	Right-handed 310
Helix 45	AE9	D	61	69	Right-handed alpha
Helix 46	AF1	D	79	87	Right-handed alpha
Helix 47	AF2	D	107	115	Right-handed alpha
Helix 48	AF3	D	116	118	Right-handed 310
Helix 49	AF4	G	6	18	Right-handed alpha
Helix 50	AF5	G	43	58	Right-handed alpha
Helix 51	AF6	G	61	69	Right-handed alpha
Helix 52	AF7	G	76	86	Right-handed alpha
Helix 53	AF8	G	91	95	Right-handed 310
Helix 54	AF9	G	100	118	Right-handed alpha
Helix 55	AG1	J	8	17	Right-handed alpha
Helix 56	AG2	J	30	36	Right-handed alpha
Helix 57	AG3	J	43	58	Right-handed alpha
Helix 58	AG4	J	61	70	Right-handed alpha
Helix 59	AG5	J	77	87	Right-handed alpha
Helix 60	AG6	J	91	95	Right-handed 310
Helix 61	AG7	J	100	118	Right-handed alpha

There are 6 sheets in PDB entry 7F4T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	179	first strand
Strand 2	A	365	368	parallel
Strand 3	A	351	354	parallel
Strand 4	A	205	208	parallel
Strand 5	A	247	253	parallel
Strand 6	A	299	307	anti-parallel
Strand 7	A	271	280	anti-parallel
Strand 8	A	323	326	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	177	179	first strand
Strand 2	E	365	368	parallel
Strand 3	E	351	354	parallel
Strand 4	E	205	207	parallel
Strand 5	E	247	253	parallel
Strand 6	E	299	307	anti-parallel
Strand 7	E	271	279	anti-parallel
Strand 8	E	323	324	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	177	179	first strand
Strand 2	H	365	368	parallel
Strand 3	H	351	354	parallel
Strand 4	H	205	207	parallel
Strand 5	H	247	253	parallel
Strand 6	H	299	307	anti-parallel
Strand 7	H	274	279	anti-parallel
Strand 8	H	323	324	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	177	179	first strand
Strand 2	K	365	368	parallel
Strand 3	K	351	354	parallel
Strand 4	K	205	208	parallel
Strand 5	K	247	253	parallel
Strand 6	K	299	307	anti-parallel
Strand 7	K	271	279	anti-parallel
Strand 8	K	323	324	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	122	first strand
Strand 2	B	125	126	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	121	122	first strand
Strand 2	J	125	126	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7F4T

Analysis of interatomic Contacts of Structural Units in PDB entry:
7F4T