Analysis of interatomic Contacts of Structural Units in PDB entry:
7F4Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7F4Y entry

There are 6 chains in PDB entry 7F4Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY -1	LEU 897
T	C 2	C 19
P	G 101	C 115
B	MET 1	PHE 901
S	T 1	C 19
Q	G 101	C 115

There are 73 helices in PDB entry 7F4Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	42	46	Right-handed 310
Helix 2	AA2	A	64	79	Right-handed alpha
Helix 3	AA3	A	87	97	Right-handed alpha
Helix 4	AA4	A	104	108	Right-handed 310
Helix 5	AA5	A	163	169	Right-handed alpha
Helix 6	AA6	A	179	184	Right-handed alpha
Helix 7	AA7	A	193	208	Right-handed alpha
Helix 8	AA8	A	221	235	Right-handed alpha
Helix 9	AA9	A	235	240	Right-handed alpha
Helix 10	AB1	A	241	243	Right-handed 310
Helix 11	AB2	A	272	281	Right-handed alpha
Helix 12	AB3	A	289	299	Right-handed alpha
Helix 13	AB4	A	308	310	Right-handed 310
Helix 14	AB5	A	311	339	Right-handed alpha
Helix 15	AB6	A	339	351	Right-handed alpha
Helix 16	AB7	A	354	359	Right-handed 310
Helix 17	AB8	A	360	375	Right-handed alpha
Helix 18	AB9	A	414	423	Right-handed alpha
Helix 19	AC1	A	438	444	Right-handed alpha
Helix 20	AC2	A	469	503	Right-handed alpha
Helix 21	AC3	A	523	531	Right-handed alpha
Helix 22	AC4	A	534	570	Right-handed alpha
Helix 23	AC5	A	579	610	Right-handed alpha
Helix 24	AC6	A	629	637	Right-handed alpha
Helix 25	AC7	A	638	641	Right-handed 310
Helix 26	AC8	A	643	658	Right-handed alpha
Helix 27	AC9	A	658	675	Right-handed alpha
Helix 28	AD1	A	730	734	Right-handed 310
Helix 29	AD2	A	738	755	Right-handed alpha
Helix 30	AD3	A	756	771	Right-handed alpha
Helix 31	AD4	A	772	774	Right-handed 310
Helix 32	AD5	A	776	780	Right-handed 310
Helix 33	AD6	A	802	815	Right-handed alpha
Helix 34	AD7	A	855	866	Right-handed alpha
Helix 35	AD8	A	867	876	Right-handed alpha
Helix 36	AD9	A	876	888	Right-handed alpha
Helix 37	AE1	B	42	46	Right-handed 310
Helix 38	AE2	B	64	79	Right-handed alpha
Helix 39	AE3	B	87	97	Right-handed alpha
Helix 40	AE4	B	104	108	Right-handed 310
Helix 41	AE5	B	163	169	Right-handed alpha
Helix 42	AE6	B	193	208	Right-handed alpha
Helix 43	AE7	B	221	235	Right-handed alpha
Helix 44	AE8	B	235	240	Right-handed alpha
Helix 45	AE9	B	241	243	Right-handed 310
Helix 46	AF1	B	272	281	Right-handed alpha
Helix 47	AF2	B	289	299	Right-handed alpha
Helix 48	AF3	B	311	339	Right-handed alpha
Helix 49	AF4	B	339	352	Right-handed alpha
Helix 50	AF5	B	354	359	Right-handed 310
Helix 51	AF6	B	360	376	Right-handed alpha
Helix 52	AF7	B	414	424	Right-handed alpha
Helix 53	AF8	B	426	428	Right-handed 310
Helix 54	AF9	B	438	444	Right-handed alpha
Helix 55	AG1	B	469	499	Right-handed alpha
Helix 56	AG2	B	500	502	Right-handed 310
Helix 57	AG3	B	523	532	Right-handed alpha
Helix 58	AG4	B	534	571	Right-handed alpha
Helix 59	AG5	B	579	610	Right-handed alpha
Helix 60	AG6	B	629	636	Right-handed alpha
Helix 61	AG7	B	637	641	Right-handed 310
Helix 62	AG8	B	643	658	Right-handed alpha
Helix 63	AG9	B	658	674	Right-handed alpha
Helix 64	AH1	B	730	734	Right-handed 310
Helix 65	AH2	B	738	755	Right-handed alpha
Helix 66	AH3	B	756	771	Right-handed alpha
Helix 67	AH4	B	772	774	Right-handed 310
Helix 68	AH5	B	776	780	Right-handed 310
Helix 69	AH6	B	787	791	Right-handed alpha
Helix 70	AH7	B	802	816	Right-handed alpha
Helix 71	AH8	B	858	866	Right-handed alpha
Helix 72	AH9	B	867	876	Right-handed alpha
Helix 73	AI1	B	876	888	Right-handed alpha

There are 20 sheets in PDB entry 7F4Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	11	first strand
Strand 2	A	14	20	anti-parallel
Strand 3	A	26	31	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	40	first strand
Strand 2	A	56	61	anti-parallel
Strand 3	A	49	51	anti-parallel
Strand 4	A	378	379	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	191	first strand
Strand 2	A	145	151	parallel
Strand 3	A	135	140	anti-parallel
Strand 4	A	110	116	anti-parallel
Strand 5	A	212	214	parallel
Strand 6	A	269	270	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	154	first strand
Strand 2	A	157	158	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	255	first strand
Strand 2	A	258	265	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	402	403	first strand
Strand 2	A	700	704	anti-parallel
Strand 3	A	707	715	anti-parallel
Strand 4	A	683	689	anti-parallel
Strand 5	A	407	412	anti-parallel
Strand 6	A	624	628	anti-parallel
Strand 7	A	617	619	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	402	403	first strand
Strand 2	A	700	704	anti-parallel
Strand 3	A	707	715	anti-parallel
Strand 4	A	718	728	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	433	first strand
Strand 2	A	461	463	anti-parallel
Strand 3	A	455	456	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	781	784	first strand
Strand 2	A	829	834	anti-parallel
Strand 3	A	845	849	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	792	793	first strand
Strand 2	A	796	797	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	11	first strand
Strand 2	B	14	20	anti-parallel
Strand 3	B	26	31	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	61	first strand
Strand 2	B	36	40	anti-parallel
Strand 3	B	82	83	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	51	first strand
Strand 2	B	378	379	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	191	first strand
Strand 2	B	145	151	parallel
Strand 3	B	135	140	anti-parallel
Strand 4	B	110	116	anti-parallel
Strand 5	B	212	214	parallel
Strand 6	B	269	270	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	254	first strand
Strand 2	B	259	265	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	402	403	first strand
Strand 2	B	700	704	anti-parallel
Strand 3	B	707	715	anti-parallel
Strand 4	B	683	689	anti-parallel
Strand 5	B	407	412	anti-parallel
Strand 6	B	624	628	anti-parallel
Strand 7	B	617	621	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	402	403	first strand
Strand 2	B	700	704	anti-parallel
Strand 3	B	707	715	anti-parallel
Strand 4	B	718	728	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	430	433	first strand
Strand 2	B	461	463	anti-parallel
Strand 3	B	455	456	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	781	784	first strand
Strand 2	B	829	834	anti-parallel
Strand 3	B	845	849	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	792	793	first strand
Strand 2	B	796	797	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7F4Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
7F4Y