Analysis of interatomic Contacts of Structural Units in PDB entry:
7F52

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7F52 entry

There are 2 chains in PDB entry 7F52 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 13	TRP 596
B	LEU 13	TRP 596

There are 51 helices in PDB entry 7F52. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	33	Right-handed alpha
Helix 2	AA2	A	41	58	Right-handed alpha
Helix 3	AA3	A	93	101	Right-handed alpha
Helix 4	AA4	A	104	116	Right-handed alpha
Helix 5	AA5	A	117	119	Right-handed 310
Helix 6	AA6	A	123	138	Right-handed alpha
Helix 7	AA7	A	139	148	Right-handed alpha
Helix 8	AA8	A	151	159	Right-handed alpha
Helix 9	AA9	A	161	175	Right-handed alpha
Helix 10	AB1	A	178	180	Right-handed 310
Helix 11	AB2	A	181	198	Right-handed alpha
Helix 12	AB3	A	202	204	Right-handed 310
Helix 13	AB4	A	205	220	Right-handed alpha
Helix 14	AB5	A	237	239	Right-handed 310
Helix 15	AB6	A	243	256	Right-handed alpha
Helix 16	AB7	A	260	264	Right-handed 310
Helix 17	AB8	A	376	391	Right-handed alpha
Helix 18	AB9	A	393	404	Right-handed alpha
Helix 19	AC1	A	431	440	Right-handed alpha
Helix 20	AC2	A	454	468	Right-handed alpha
Helix 21	AC3	A	477	492	Right-handed alpha
Helix 22	AC4	A	496	506	Right-handed alpha
Helix 23	AC5	A	510	520	Right-handed alpha
Helix 24	AC6	A	525	531	Right-handed alpha
Helix 25	AC7	A	552	562	Right-handed alpha
Helix 26	AC8	B	24	33	Right-handed alpha
Helix 27	AC9	B	41	59	Right-handed alpha
Helix 28	AD1	B	93	101	Right-handed alpha
Helix 29	AD2	B	106	116	Right-handed alpha
Helix 30	AD3	B	116	121	Right-handed alpha
Helix 31	AD4	B	123	133	Right-handed alpha
Helix 32	AD5	B	133	138	Right-handed alpha
Helix 33	AD6	B	139	149	Right-handed alpha
Helix 34	AD7	B	151	159	Right-handed alpha
Helix 35	AD8	B	159	175	Right-handed alpha
Helix 36	AD9	B	181	198	Right-handed alpha
Helix 37	AE1	B	205	220	Right-handed alpha
Helix 38	AE2	B	237	239	Right-handed 310
Helix 39	AE3	B	243	256	Right-handed alpha
Helix 40	AE4	B	261	263	Right-handed 310
Helix 41	AE5	B	376	391	Right-handed alpha
Helix 42	AE6	B	393	404	Right-handed alpha
Helix 43	AE7	B	431	440	Right-handed alpha
Helix 44	AE8	B	454	468	Right-handed alpha
Helix 45	AE9	B	470	475	Right-handed alpha
Helix 46	AF1	B	477	494	Right-handed alpha
Helix 47	AF2	B	497	502	Right-handed alpha
Helix 48	AF3	B	504	508	Right-handed 310
Helix 49	AF4	B	510	522	Right-handed alpha
Helix 50	AF5	B	525	531	Right-handed alpha
Helix 51	AF6	B	552	563	Right-handed alpha

There are 11 sheets in PDB entry 7F52. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	19	first strand
Strand 2	A	69	75	parallel
Strand 3	A	62	66	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	229	first strand
Strand 2	A	232	235	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	267	first strand
Strand 2	A	270	273	anti-parallel
Strand 3	A	276	281	anti-parallel
Strand 4	A	293	297	anti-parallel

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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	303	304	first strand
Strand 2	A	306	310	first strand
Strand 3	A	315	320	first strand
Strand 4	A	328	334	parallel
Strand 5	A	337	344	anti-parallel
Strand 6	A	347	354	anti-parallel
Strand 7	A	357	358	anti-parallel
Strand 8	A	363	371	anti-parallel
Strand 9	A	407	409	first strand
Strand 10	A	412	415	anti-parallel
Strand 11	A	424	426	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	534	537	first strand
Strand 2	A	542	545	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	574	575	first strand
Strand 2	A	578	579	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	63	first strand
Strand 2	B	72	74	anti-parallel
Strand 3	B	17	19	parallel
Strand 4	B	87	88	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	229	first strand
Strand 2	B	232	235	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	260	first strand
Strand 2	B	264	267	anti-parallel
Strand 3	B	270	272	anti-parallel
Strand 4	B	277	282	anti-parallel
Strand 5	B	292	297	anti-parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	303	304	first strand
Strand 2	B	306	310	first strand
Strand 3	B	315	320	first strand
Strand 4	B	328	334	parallel
Strand 5	B	337	344	anti-parallel
Strand 6	B	347	354	anti-parallel
Strand 7	B	357	358	anti-parallel
Strand 8	B	363	370	anti-parallel
Strand 9	B	407	409	first strand
Strand 10	B	412	415	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	534	537	first strand
Strand 2	B	542	545	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7F52

Analysis of interatomic Contacts of Structural Units in PDB entry:
7F52