Analysis of interatomic Contacts of Structural Units in PDB entry:
7F58

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7F58 entry

There are 5 chains in PDB entry 7F58 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	GLY 39	TYR 320
A	ASP 11	LEU 394
B	GLU 3	ASN 340
G	THR 6	ARG 62
N	GLN 1	VAL 126

There are 27 helices in PDB entry 7F58. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	47	71	Right-handed alpha
Helix 2	AA2	R	77	110	Right-handed alpha
Helix 3	AA3	R	117	153	Right-handed alpha
Helix 4	AA4	R	156	161	Right-handed alpha
Helix 5	AA5	R	162	187	Right-handed alpha
Helix 6	AA6	R	190	228	Right-handed alpha
Helix 7	AA7	R	238	271	Right-handed alpha
Helix 8	AA8	R	274	282	Right-handed alpha
Helix 9	AA9	R	283	302	Right-handed alpha
Helix 10	AB1	R	303	305	Right-handed 310
Helix 11	AB2	R	306	320	Right-handed alpha
Helix 12	AB3	A	12	39	Right-handed alpha
Helix 13	AB4	A	52	60	Right-handed alpha
Helix 14	AB5	A	264	278	Right-handed alpha
Helix 15	AB6	A	293	303	Right-handed alpha
Helix 16	AB7	A	307	311	Right-handed 310
Helix 17	AB8	A	312	318	Right-handed 310
Helix 18	AB9	A	331	353	Right-handed alpha
Helix 19	AC1	A	370	391	Right-handed alpha
Helix 20	AC2	B	4	25	Right-handed alpha
Helix 21	AC3	B	29	37	Right-handed 310
Helix 22	AC4	G	8	24	Right-handed alpha
Helix 23	AC5	G	29	44	Right-handed alpha
Helix 24	AC6	G	45	48	Right-handed 310
Helix 25	AC7	N	28	32	Right-handed 310
Helix 26	AC8	N	62	65	Right-handed 310
Helix 27	AC9	N	87	91	Right-handed 310

There are 10 sheets in PDB entry 7F58. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	214	first strand
Strand 2	A	217	224	anti-parallel
Strand 3	A	40	47	parallel
Strand 4	A	243	249	parallel
Strand 5	A	286	292	parallel
Strand 6	A	359	363	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	327	330	anti-parallel
Strand 4	B	317	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	153	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	175	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	293	298	anti-parallel
Strand 4	B	304	309	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	18	25	anti-parallel
Strand 3	N	78	83	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	11	first strand
Strand 2	N	122	125	parallel
Strand 3	N	92	98	anti-parallel
Strand 4	N	34	39	anti-parallel
Strand 5	N	46	51	anti-parallel
Strand 6	N	58	60	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7F58

Analysis of interatomic Contacts of Structural Units in PDB entry:
7F58