Analysis of interatomic Contacts of Structural Units in PDB entry:
7F5B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7F5B entry

There are 5 chains in PDB entry 7F5B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 431	MET 867
B	ARG 431	GLU 863
C	ARG 431	MET 867
D	ARG 431	ALA 850
E	CYS 177	LYS 376

There are 67 helices in PDB entry 7F5B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	461	475	Right-handed alpha
Helix 2	AA2	A	499	507	Right-handed alpha
Helix 3	AA3	A	520	525	Right-handed alpha
Helix 4	AA4	A	560	584	Right-handed alpha
Helix 5	AA5	A	607	620	Right-handed alpha
Helix 6	AA6	A	630	665	Right-handed alpha
Helix 7	AA7	A	670	677	Right-handed alpha
Helix 8	AA8	A	689	697	Right-handed alpha
Helix 9	AA9	A	699	713	Right-handed alpha
Helix 10	AB1	A	721	731	Right-handed alpha
Helix 11	AB2	A	739	749	Right-handed alpha
Helix 12	AB3	A	773	789	Right-handed alpha
Helix 13	AB4	A	789	799	Right-handed alpha
Helix 14	AB5	A	824	851	Right-handed alpha
Helix 15	AB6	A	855	866	Right-handed alpha
Helix 16	AB7	B	450	454	Right-handed 310
Helix 17	AB8	B	461	475	Right-handed alpha
Helix 18	AB9	B	500	506	Right-handed alpha
Helix 19	AC1	B	520	527	Right-handed alpha
Helix 20	AC2	B	551	557	Right-handed alpha
Helix 21	AC3	B	560	585	Right-handed alpha
Helix 22	AC4	B	607	620	Right-handed alpha
Helix 23	AC5	B	631	662	Right-handed alpha
Helix 24	AC6	B	670	675	Right-handed alpha
Helix 25	AC7	B	688	695	Right-handed alpha
Helix 26	AC8	B	701	712	Right-handed alpha
Helix 27	AC9	B	720	731	Right-handed alpha
Helix 28	AD1	B	740	747	Right-handed alpha
Helix 29	AD2	B	773	789	Right-handed alpha
Helix 30	AD3	B	789	799	Right-handed alpha
Helix 31	AD4	B	816	821	Right-handed alpha
Helix 32	AD5	B	821	850	Right-handed alpha
Helix 33	AD6	B	855	863	Right-handed alpha
Helix 34	AD7	C	454	457	Right-handed 310
Helix 35	AD8	C	462	475	Right-handed alpha
Helix 36	AD9	C	499	507	Right-handed alpha
Helix 37	AE1	C	520	526	Right-handed alpha
Helix 38	AE2	C	553	557	Right-handed 310
Helix 39	AE3	C	562	583	Right-handed alpha
Helix 40	AE4	C	607	621	Right-handed alpha
Helix 41	AE5	C	630	663	Right-handed alpha
Helix 42	AE6	C	670	677	Right-handed alpha
Helix 43	AE7	C	690	697	Right-handed alpha
Helix 44	AE8	C	699	713	Right-handed alpha
Helix 45	AE9	C	720	731	Right-handed alpha
Helix 46	AF1	C	739	747	Right-handed alpha
Helix 47	AF2	C	773	788	Right-handed alpha
Helix 48	AF3	C	789	800	Right-handed alpha
Helix 49	AF4	C	824	848	Right-handed alpha
Helix 50	AF5	C	856	867	Right-handed alpha
Helix 51	AF6	D	454	457	Right-handed 310
Helix 52	AF7	D	461	475	Right-handed alpha
Helix 53	AF8	D	500	507	Right-handed alpha
Helix 54	AF9	D	520	527	Right-handed alpha
Helix 55	AG1	D	560	584	Right-handed alpha
Helix 56	AG2	D	609	620	Right-handed alpha
Helix 57	AG3	D	633	661	Right-handed alpha
Helix 58	AG4	D	670	675	Right-handed alpha
Helix 59	AG5	D	689	695	Right-handed alpha
Helix 60	AG6	D	702	712	Right-handed alpha
Helix 61	AG7	D	720	731	Right-handed alpha
Helix 62	AG8	D	739	749	Right-handed alpha
Helix 63	AG9	D	773	788	Right-handed alpha
Helix 64	AH1	D	789	800	Right-handed alpha
Helix 65	AH2	D	821	850	Right-handed alpha
Helix 66	AH3	E	340	344	Right-handed alpha
Helix 67	AH4	E	347	372	Right-handed alpha

There are 20 sheets in PDB entry 7F5B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	478	482	first strand
Strand 2	A	433	437	parallel
Strand 3	A	512	513	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	445	446	first strand
Strand 2	A	459	460	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	535	536	first strand
Strand 2	A	762	763	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	539	first strand
Strand 2	A	737	738	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	432	433	first strand
Strand 2	B	477	478	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	436	437	first strand
Strand 2	B	481	482	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	445	446	first strand
Strand 2	B	459	460	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	513	514	first strand
Strand 2	B	766	767	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	534	536	first strand
Strand 2	B	762	764	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	540	543	first strand
Strand 2	B	752	755	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	433	437	first strand
Strand 2	C	478	482	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	444	446	first strand
Strand 2	C	459	461	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	737	738	first strand
Strand 2	C	538	543	anti-parallel
Strand 3	C	752	755	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	445	446	first strand
Strand 2	D	459	460	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	514	518	first strand
Strand 2	D	763	768	anti-parallel
Strand 3	D	528	529	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	514	518	first strand
Strand 2	D	763	768	anti-parallel
Strand 3	D	534	535	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	538	541	first strand
Strand 2	D	735	738	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	684	685	first strand
Strand 2	D	717	718	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	179	180	first strand
Strand 2	E	206	212	parallel
Strand 3	E	269	275	anti-parallel
Strand 4	E	238	243	anti-parallel
Strand 5	E	251	255	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	185	186	first strand
Strand 2	E	285	290	anti-parallel
Strand 3	E	219	226	anti-parallel
Strand 4	E	263	265	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7F5B

Analysis of interatomic Contacts of Structural Units in PDB entry:
7F5B