Analysis of interatomic Contacts of Structural Units in PDB entry:
7F5K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7F5K entry

There are 4 chains in PDB entry 7F5K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3THR 194
B
 ALA 1ASP 236
C
 LYS 3THR 194
D
 ALA 1ASP 236
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 7F5K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
80 84Right-handed 310
Helix 2
AA2
B
112 116Right-handed 310
Helix 3
AA3
B
127 135Right-handed alpha
Helix 4
AA4
B
190 195Right-handed alpha
Helix 5
AA5
C
80 84Right-handed 310
Helix 6
AA6
D
80 84Right-handed 310
Helix 7
AA7
D
112 116Right-handed 310
Helix 8
AA8
D
127 135Right-handed alpha
Helix 9
AA9
D
190 194Right-handed alpha
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There are 19 sheets in PDB entry 7F5K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
19 24anti-parallel
Strand 3
A
73 76anti-parallel
Strand 4
A
61 64anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 13first strand
Strand 2
A
106 109parallel
Strand 3
A
85 91anti-parallel
Strand 4
A
33 38anti-parallel
Strand 5
A
45 50anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 124first strand
Strand 2
A
132 137anti-parallel
Strand 3
A
173 177anti-parallel
Strand 4
A
153 156anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 161first strand
Strand 2
B
166 168anti-parallel
Strand 3
B
180 189anti-parallel
Strand 4
B
136 146anti-parallel
Strand 5
B
120 124anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 161first strand
Strand 2
B
166 168anti-parallel
Strand 3
B
180 189anti-parallel
Strand 4
B
173 174anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 5first strand
Strand 2
B
17 23anti-parallel
Strand 3
B
71 76anti-parallel
Strand 4
B
63 68anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 12first strand
Strand 2
B
105 110parallel
Strand 3
B
85 92anti-parallel
Strand 4
B
29 35anti-parallel
Strand 5
B
42 47anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 12first strand
Strand 2
B
105 110parallel
Strand 3
B
85 92anti-parallel
Strand 4
B
100 101anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 162first strand
Strand 2
B
151 157anti-parallel
Strand 3
B
199 206anti-parallel
Strand 4
B
225 232anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 6first strand
Strand 2
C
19 25anti-parallel
Strand 3
C
71 76anti-parallel
Strand 4
C
61 66anti-parallel
Strand 5
C
54 58anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 14first strand
Strand 2
C
105 110parallel
Strand 3
C
85 92anti-parallel
Strand 4
C
32 38anti-parallel
Strand 5
C
44 50anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 14first strand
Strand 2
C
105 110parallel
Strand 3
C
85 92anti-parallel
Strand 4
C
100 101anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
119 124first strand
Strand 2
C
132 137anti-parallel
Strand 3
C
170 176anti-parallel
Strand 4
C
154 155anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
119 124first strand
Strand 2
C
132 137anti-parallel
Strand 3
C
170 176anti-parallel
Strand 4
C
159 161anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 5first strand
Strand 2
D
17 23anti-parallel
Strand 3
D
71 76anti-parallel
Strand 4
D
62 65anti-parallel
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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
8 12first strand
Strand 2
D
105 110parallel
Strand 3
D
85 92anti-parallel
Strand 4
D
29 35anti-parallel
Strand 5
D
41 47anti-parallel
Strand 6
D
54 55anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
8 12first strand
Strand 2
D
105 110parallel
Strand 3
D
85 92anti-parallel
Strand 4
D
100 101anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
120 124first strand
Strand 2
D
136 146anti-parallel
Strand 3
D
180 189anti-parallel
Strand 4
D
166 168anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
160 162first strand
Strand 2
D
153 157anti-parallel
Strand 3
D
200 206anti-parallel
Strand 4
D
225 231anti-parallel
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