Analysis of interatomic Contacts of Structural Units in PDB entry:
7F5O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7F5O entry

There are 3 chains in PDB entry 7F5O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -2ASP 302
B
 THR 3ALA 276
C
 PRO 2GLU 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 7F5O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 15Right-handed alpha
Helix 2
AA2
A
17 29Right-handed alpha
Helix 3
AA3
A
34 39Right-handed alpha
Helix 4
AA4
A
40 46Right-handed 310
Helix 5
AA5
A
77 80Right-handed 310
Helix 6
AA6
A
93 105Right-handed alpha
Helix 7
AA7
A
188 201Right-handed alpha
Helix 8
AA8
A
221 236Right-handed alpha
Helix 9
AA9
A
243 253Right-handed alpha
Helix 10
AB1
A
261 276Right-handed alpha
Helix 11
AB2
A
286 294Right-handed alpha
Helix 12
AB3
B
4 15Right-handed alpha
Helix 13
AB4
B
17 29Right-handed alpha
Helix 14
AB5
B
35 46Right-handed 310
Helix 15
AB6
B
77 80Right-handed 310
Helix 16
AB7
B
90 92Right-handed 310
Helix 17
AB8
B
93 104Right-handed alpha
Helix 18
AB9
B
188 202Right-handed alpha
Helix 19
AC1
B
221 236Right-handed alpha
Helix 20
AC2
B
243 252Right-handed alpha
Helix 21
AC3
B
261 275Right-handed alpha
Helix 22
AC4
C
3 16Right-handed alpha
Helix 23
AC5
C
17 29Right-handed alpha
Helix 24
AC6
C
35 46Right-handed 310
Helix 25
AC7
C
54 56Right-handed 310
Helix 26
AC8
C
77 80Right-handed 310
Helix 27
AC9
C
93 105Right-handed alpha
Helix 28
AD1
C
188 202Right-handed alpha
Helix 29
AD2
C
220 236Right-handed alpha
Helix 30
AD3
C
243 252Right-handed alpha
Helix 31
AD4
C
261 276Right-handed alpha
Helix 32
AD5
C
287 294Right-handed alpha
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There are 6 sheets in PDB entry 7F5O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
68 76anti-parallel
Strand 3
A
81 86anti-parallel
Strand 4
A
212 215parallel
Strand 5
A
108 111parallel
Strand 6
A
169 177parallel
Strand 7
A
154 163anti-parallel
Strand 8
A
141 150anti-parallel
Strand 9
A
134 136anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 117first strand
Strand 2
A
120 121anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 60first strand
Strand 2
B
68 76anti-parallel
Strand 3
B
81 86anti-parallel
Strand 4
B
212 215parallel
Strand 5
B
108 111parallel
Strand 6
B
169 177parallel
Strand 7
B
154 163anti-parallel
Strand 8
B
141 150anti-parallel
Strand 9
B
134 136anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 117first strand
Strand 2
B
120 121anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 60first strand
Strand 2
C
68 76anti-parallel
Strand 3
C
81 86anti-parallel
Strand 4
C
212 215parallel
Strand 5
C
108 111parallel
Strand 6
C
169 177parallel
Strand 7
C
154 163anti-parallel
Strand 8
C
141 150anti-parallel
Strand 9
C
134 136anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
116 117first strand
Strand 2
C
120 121anti-parallel
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