Analysis of interatomic Contacts of Structural Units in PDB entry:
7F5P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7F5P entry

There are 2 chains in PDB entry 7F5P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 43ALA 170
A
 GLY 173VAL 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 7F5P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
64 66Right-handed 310
Helix 2
AA2
A
67 84Right-handed alpha
Helix 3
AA3
A
87 89Right-handed 310
Helix 4
AA4
A
129 133Right-handed 310
Helix 5
AA5
A
134 144Right-handed alpha
Helix 6
AA6
A
145 149Right-handed 310
Helix 7
AA7
A
188 202Right-handed alpha
Helix 8
AA8
A
215 220Right-handed 310
Helix 9
AA9
A
264 276Right-handed alpha
Helix 10
AB1
A
282 294Right-handed alpha
Helix 11
AB2
A
306 312Right-handed 310
Helix 12
AB3
A
313 318Right-handed alpha
Helix 13
AB4
A
320 324Right-handed 310
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There are 3 sheets in PDB entry 7F5P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 94first strand
Strand 2
A
54 60parallel
Strand 3
A
164 170parallel
Strand 4
A
206 212parallel
Strand 5
A
230 234parallel
Strand 6
A
301 304anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 174first strand
Strand 2
A
177 178anti-parallel
Strand 3
A
186 187anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 245first strand
Strand 2
A
262 263anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il