Analysis of interatomic Contacts of Structural Units in PDB entry:
7F5R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7F5R entry

There are 3 chains in PDB entry 7F5R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 19	ALA 713
E	LEU 335	HIS 528
B	SER 19	VAL 463

There are116 helices in PDB entry 7F5R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	52	Right-handed alpha
Helix 2	AA2	A	55	81	Right-handed alpha
Helix 3	AA3	A	82	83	Right-handed 310
Helix 4	AA4	A	84	88	Right-handed 310
Helix 5	AA5	A	90	102	Right-handed alpha
Helix 6	AA6	A	109	130	Right-handed alpha
Helix 7	AA7	A	146	155	Right-handed alpha
Helix 8	AA8	A	157	194	Right-handed alpha
Helix 9	AA9	A	198	205	Right-handed alpha
Helix 10	AB1	A	206	208	Right-handed 310
Helix 11	AB2	A	218	252	Right-handed alpha
Helix 12	AB3	A	265	267	Right-handed 310
Helix 13	AB4	A	274	282	Right-handed 310
Helix 14	AB5	A	293	300	Right-handed alpha
Helix 15	AB6	A	303	318	Right-handed alpha
Helix 16	AB7	A	324	331	Right-handed alpha
Helix 17	AB8	A	365	385	Right-handed alpha
Helix 18	AB9	A	389	393	Right-handed 310
Helix 19	AC1	A	399	414	Right-handed alpha
Helix 20	AC2	A	414	421	Right-handed alpha
Helix 21	AC3	A	431	466	Right-handed alpha
Helix 22	AC4	A	469	471	Right-handed 310
Helix 23	AC5	A	472	486	Right-handed alpha
Helix 24	AC6	A	498	502	Right-handed 310
Helix 25	AC7	A	503	508	Right-handed alpha
Helix 26	AC8	A	513	632	Right-handed alpha
Helix 27	AC9	A	646	658	Right-handed alpha
Helix 28	AD1	A	664	674	Right-handed alpha
Helix 29	AD2	A	680	698	Right-handed alpha
Helix 30	AD3	E	338	343	Right-handed alpha
Helix 31	AD4	E	349	353	Right-handed 310
Helix 32	AD5	E	383	390	Right-handed 310
Helix 33	AD6	E	404	408	Right-handed alpha
Helix 34	AD7	E	416	422	Right-handed alpha
Helix 35	AD8	E	438	443	Right-handed alpha
Helix 36	AD9	E	502	505	Right-handed 310
Helix 37	AE1	B	20	53	Right-handed alpha
Helix 38	AE2	B	55	81	Right-handed alpha
Helix 39	AE3	B	82	83	Right-handed 310
Helix 40	AE4	B	84	88	Right-handed 310
Helix 41	AE5	B	90	102	Right-handed alpha
Helix 42	AE6	B	103	108	Right-handed 310
Helix 43	AE7	B	109	129	Right-handed alpha
Helix 44	AE8	B	146	155	Right-handed alpha
Helix 45	AE9	B	157	193	Right-handed alpha
Helix 46	AF1	B	198	205	Right-handed alpha
Helix 47	AF2	B	206	208	Right-handed 310
Helix 48	AF3	B	218	252	Right-handed alpha
Helix 49	AF4	B	265	267	Right-handed 310
Helix 50	AF5	B	275	282	Right-handed 310
Helix 51	AF6	B	293	300	Right-handed alpha
Helix 52	AF7	B	303	318	Right-handed alpha
Helix 53	AF8	B	324	331	Right-handed alpha
Helix 54	AF9	B	365	385	Right-handed alpha
Helix 55	AG1	B	389	393	Right-handed 310
Helix 56	AG2	B	399	413	Right-handed alpha
Helix 57	AG3	B	414	421	Right-handed alpha
Helix 58	AG4	B	431	466	Right-handed alpha
Helix 59	AG5	B	469	471	Right-handed 310
Helix 60	AG6	B	472	484	Right-handed alpha
Helix 61	AG7	B	498	502	Right-handed 310
Helix 62	AG8	B	503	508	Right-handed alpha
Helix 63	AG9	B	513	533	Right-handed alpha
Helix 64	AH1	B	538	542	Right-handed 310
Helix 65	AH2	B	547	559	Right-handed alpha
Helix 66	AH3	B	565	575	Right-handed alpha
Helix 67	AH4	B	581	588	Right-handed alpha
Helix 68	AH5	B	588	599	Right-handed alpha
Helix 69	AH6	C	337	343	Right-handed alpha
Helix 70	AH7	C	349	353	Right-handed 310
Helix 71	AH8	C	383	389	Right-handed 310
Helix 72	AH9	C	405	410	Right-handed 310
Helix 73	AI1	C	416	422	Right-handed alpha
Helix 74	AI2	C	438	443	Right-handed alpha
Helix 75	AI3	C	502	505	Right-handed 310
Helix 76	AI4	D	20	52	Right-handed alpha
Helix 77	AI5	D	55	81	Right-handed alpha
Helix 78	AI6	D	82	83	Right-handed 310
Helix 79	AI7	D	84	88	Right-handed 310
Helix 80	AI8	D	90	102	Right-handed alpha
Helix 81	AI9	D	104	108	Right-handed 310
Helix 82	AJ1	D	109	129	Right-handed alpha
Helix 83	AJ2	D	146	155	Right-handed alpha
Helix 84	AJ3	D	157	194	Right-handed alpha
Helix 85	AJ4	D	198	205	Right-handed alpha
Helix 86	AJ5	D	206	208	Right-handed 310
Helix 87	AJ6	D	218	252	Right-handed alpha
Helix 88	AJ7	D	265	267	Right-handed 310
Helix 89	AJ8	D	274	283	Right-handed 310
Helix 90	AJ9	D	293	300	Right-handed alpha
Helix 91	AK1	D	303	318	Right-handed alpha
Helix 92	AK2	D	324	331	Right-handed alpha
Helix 93	AK3	D	365	385	Right-handed alpha
Helix 94	AK4	D	389	393	Right-handed 310
Helix 95	AK5	D	399	414	Right-handed alpha
Helix 96	AK6	D	414	421	Right-handed alpha
Helix 97	AK7	D	431	446	Right-handed alpha
Helix 98	AK8	D	448	465	Right-handed alpha
Helix 99	AK9	D	469	471	Right-handed 310
Helix 100	AL1	D	472	484	Right-handed alpha
Helix 101	AL2	D	498	502	Right-handed 310
Helix 102	AL3	D	503	508	Right-handed alpha
Helix 103	AL4	D	513	533	Right-handed alpha
Helix 104	AL5	D	538	542	Right-handed 310
Helix 105	AL6	D	547	559	Right-handed alpha
Helix 106	AL7	D	565	575	Right-handed alpha
Helix 107	AL8	D	581	599	Right-handed alpha
Helix 108	AL9	D	600	602	Right-handed 310
Helix 109	AM1	F	338	343	Right-handed alpha
Helix 110	AM2	F	349	353	Right-handed 310
Helix 111	AM3	F	364	371	Right-handed alpha
Helix 112	AM4	F	385	389	Right-handed 310
Helix 113	AM5	F	405	410	Right-handed 310
Helix 114	AM6	F	416	422	Right-handed alpha
Helix 115	AM7	F	438	443	Right-handed alpha
Helix 116	AM8	F	502	505	Right-handed 310

There are 20 sheets in PDB entry 7F5R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	134	first strand
Strand 2	A	137	143	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	263	first strand
Strand 2	A	487	488	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	352	first strand
Strand 2	A	355	359	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	354	358	first strand
Strand 2	E	394	403	anti-parallel
Strand 3	E	507	516	anti-parallel
Strand 4	E	431	437	anti-parallel
Strand 5	E	376	379	anti-parallel
Strand 6	C	376	380	anti-parallel
Strand 7	C	431	437	anti-parallel
Strand 8	C	507	516	anti-parallel
Strand 9	C	394	403	anti-parallel
Strand 10	C	354	358	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	361	362	first strand
Strand 2	E	524	525	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	452	454	first strand
Strand 2	E	492	494	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	473	474	first strand
Strand 2	E	488	489	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	133	first strand
Strand 2	B	141	143	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	263	first strand
Strand 2	B	487	488	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	352	first strand
Strand 2	B	355	359	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	361	362	first strand
Strand 2	C	524	525	parallel
Strand 3	C	391	392	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	452	454	first strand
Strand 2	C	492	494	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	473	474	first strand
Strand 2	C	488	489	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	133	first strand
Strand 2	D	141	143	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	262	263	first strand
Strand 2	D	487	488	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	347	352	first strand
Strand 2	D	355	359	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	354	358	first strand
Strand 2	F	394	403	anti-parallel
Strand 3	F	507	516	anti-parallel
Strand 4	F	431	437	anti-parallel
Strand 5	F	376	380	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	361	362	first strand
Strand 2	F	524	525	parallel
Strand 3	F	391	392	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	452	454	first strand
Strand 2	F	492	494	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	473	474	first strand
Strand 2	F	488	489	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7F5R

Analysis of interatomic Contacts of Structural Units in PDB entry:
7F5R