Analysis of interatomic Contacts of Structural Units in PDB entry:
7F5V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7F5V entry

There are 4 chains in PDB entry 7F5V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 45	ASP 776
B	PRO 45	ASP 776
C	PRO 45	ASP 776
D	PRO 45	ASP 776

There are112 helices in PDB entry 7F5V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	51	56	Right-handed 310
Helix 2	AA2	A	64	69	Right-handed alpha
Helix 3	AA3	A	77	93	Right-handed alpha
Helix 4	AA4	A	104	119	Right-handed alpha
Helix 5	AA5	A	122	127	Right-handed alpha
Helix 6	AA6	A	141	163	Right-handed alpha
Helix 7	AA7	A	175	179	Right-handed 310
Helix 8	AA8	A	180	196	Right-handed alpha
Helix 9	AA9	A	234	244	Right-handed alpha
Helix 10	AB1	A	296	307	Right-handed alpha
Helix 11	AB2	A	322	327	Right-handed alpha
Helix 12	AB3	A	348	363	Right-handed alpha
Helix 13	AB4	A	368	384	Right-handed alpha
Helix 14	AB5	A	384	401	Right-handed alpha
Helix 15	AB6	A	405	411	Right-handed alpha
Helix 16	AB7	A	415	433	Right-handed alpha
Helix 17	AB8	A	472	481	Right-handed alpha
Helix 18	AB9	A	495	513	Right-handed alpha
Helix 19	AC1	A	527	534	Right-handed alpha
Helix 20	AC2	A	546	557	Right-handed alpha
Helix 21	AC3	A	579	592	Right-handed alpha
Helix 22	AC4	A	607	613	Right-handed 310
Helix 23	AC5	A	614	627	Right-handed alpha
Helix 24	AC6	A	633	638	Right-handed alpha
Helix 25	AC7	A	666	678	Right-handed alpha
Helix 26	AC8	A	689	700	Right-handed alpha
Helix 27	AC9	A	740	742	Right-handed 310
Helix 28	AD1	A	757	761	Right-handed 310
Helix 29	AD2	B	51	56	Right-handed 310
Helix 30	AD3	B	64	69	Right-handed alpha
Helix 31	AD4	B	77	93	Right-handed alpha
Helix 32	AD5	B	104	119	Right-handed alpha
Helix 33	AD6	B	122	127	Right-handed alpha
Helix 34	AD7	B	141	163	Right-handed alpha
Helix 35	AD8	B	175	179	Right-handed 310
Helix 36	AD9	B	180	196	Right-handed alpha
Helix 37	AE1	B	234	244	Right-handed alpha
Helix 38	AE2	B	296	307	Right-handed alpha
Helix 39	AE3	B	322	327	Right-handed alpha
Helix 40	AE4	B	348	363	Right-handed alpha
Helix 41	AE5	B	368	384	Right-handed alpha
Helix 42	AE6	B	384	401	Right-handed alpha
Helix 43	AE7	B	405	411	Right-handed alpha
Helix 44	AE8	B	415	433	Right-handed alpha
Helix 45	AE9	B	472	481	Right-handed alpha
Helix 46	AF1	B	495	513	Right-handed alpha
Helix 47	AF2	B	527	534	Right-handed alpha
Helix 48	AF3	B	546	557	Right-handed alpha
Helix 49	AF4	B	579	592	Right-handed alpha
Helix 50	AF5	B	607	613	Right-handed 310
Helix 51	AF6	B	614	627	Right-handed alpha
Helix 52	AF7	B	633	638	Right-handed alpha
Helix 53	AF8	B	666	678	Right-handed alpha
Helix 54	AF9	B	689	700	Right-handed alpha
Helix 55	AG1	B	740	742	Right-handed 310
Helix 56	AG2	B	757	761	Right-handed 310
Helix 57	AG3	C	51	56	Right-handed 310
Helix 58	AG4	C	64	69	Right-handed alpha
Helix 59	AG5	C	77	93	Right-handed alpha
Helix 60	AG6	C	104	119	Right-handed alpha
Helix 61	AG7	C	122	127	Right-handed alpha
Helix 62	AG8	C	141	163	Right-handed alpha
Helix 63	AG9	C	175	179	Right-handed 310
Helix 64	AH1	C	180	196	Right-handed alpha
Helix 65	AH2	C	234	244	Right-handed alpha
Helix 66	AH3	C	296	307	Right-handed alpha
Helix 67	AH4	C	322	327	Right-handed alpha
Helix 68	AH5	C	348	363	Right-handed alpha
Helix 69	AH6	C	368	384	Right-handed alpha
Helix 70	AH7	C	384	401	Right-handed alpha
Helix 71	AH8	C	405	411	Right-handed alpha
Helix 72	AH9	C	415	433	Right-handed alpha
Helix 73	AI1	C	472	481	Right-handed alpha
Helix 74	AI2	C	495	513	Right-handed alpha
Helix 75	AI3	C	527	534	Right-handed alpha
Helix 76	AI4	C	546	557	Right-handed alpha
Helix 77	AI5	C	579	592	Right-handed alpha
Helix 78	AI6	C	607	613	Right-handed 310
Helix 79	AI7	C	614	627	Right-handed alpha
Helix 80	AI8	C	633	638	Right-handed alpha
Helix 81	AI9	C	666	678	Right-handed alpha
Helix 82	AJ1	C	689	700	Right-handed alpha
Helix 83	AJ2	C	740	742	Right-handed 310
Helix 84	AJ3	C	757	761	Right-handed 310
Helix 85	AJ4	D	51	56	Right-handed 310
Helix 86	AJ5	D	64	69	Right-handed alpha
Helix 87	AJ6	D	77	93	Right-handed alpha
Helix 88	AJ7	D	104	119	Right-handed alpha
Helix 89	AJ8	D	122	127	Right-handed alpha
Helix 90	AJ9	D	141	163	Right-handed alpha
Helix 91	AK1	D	175	179	Right-handed 310
Helix 92	AK2	D	180	196	Right-handed alpha
Helix 93	AK3	D	234	244	Right-handed alpha
Helix 94	AK4	D	296	307	Right-handed alpha
Helix 95	AK5	D	322	327	Right-handed alpha
Helix 96	AK6	D	348	363	Right-handed alpha
Helix 97	AK7	D	368	384	Right-handed alpha
Helix 98	AK8	D	384	401	Right-handed alpha
Helix 99	AK9	D	405	411	Right-handed alpha
Helix 100	AL1	D	415	433	Right-handed alpha
Helix 101	AL2	D	472	481	Right-handed alpha
Helix 102	AL3	D	495	513	Right-handed alpha
Helix 103	AL4	D	527	534	Right-handed alpha
Helix 104	AL5	D	546	557	Right-handed alpha
Helix 105	AL6	D	579	592	Right-handed alpha
Helix 106	AL7	D	607	613	Right-handed 310
Helix 107	AL8	D	614	627	Right-handed alpha
Helix 108	AL9	D	633	638	Right-handed alpha
Helix 109	AM1	D	666	678	Right-handed alpha
Helix 110	AM2	D	689	700	Right-handed alpha
Helix 111	AM3	D	740	742	Right-handed 310
Helix 112	AM4	D	757	761	Right-handed 310

There are 20 sheets in PDB entry 7F5V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	173	first strand
Strand 2	A	200	205	parallel
Strand 3	A	100	102	parallel
Strand 4	A	59	63	parallel
Strand 5	A	248	253	parallel
Strand 6	A	311	316	parallel
Strand 7	A	334	337	anti-parallel
Strand 8	A	273	275	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	744	749	first strand
Strand 2	A	450	458	anti-parallel
Strand 3	A	440	447	anti-parallel
Strand 4	A	771	772	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	519	521	first strand
Strand 2	A	487	490	parallel
Strand 3	A	463	465	parallel
Strand 4	A	541	543	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	605	606	first strand
Strand 2	A	662	663	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	727	728	first strand
Strand 2	A	736	737	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	173	first strand
Strand 2	B	200	205	parallel
Strand 3	B	100	102	parallel
Strand 4	B	59	63	parallel
Strand 5	B	248	253	parallel
Strand 6	B	311	316	parallel
Strand 7	B	334	337	anti-parallel
Strand 8	B	273	275	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	744	749	first strand
Strand 2	B	450	458	anti-parallel
Strand 3	B	440	447	anti-parallel
Strand 4	B	771	772	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	519	521	first strand
Strand 2	B	487	490	parallel
Strand 3	B	463	465	parallel
Strand 4	B	541	543	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	605	606	first strand
Strand 2	B	662	663	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	727	728	first strand
Strand 2	B	736	737	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	173	first strand
Strand 2	C	200	205	parallel
Strand 3	C	100	102	parallel
Strand 4	C	59	63	parallel
Strand 5	C	248	253	parallel
Strand 6	C	311	316	parallel
Strand 7	C	334	337	anti-parallel
Strand 8	C	273	275	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	744	749	first strand
Strand 2	C	450	458	anti-parallel
Strand 3	C	440	447	anti-parallel
Strand 4	C	771	772	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	519	521	first strand
Strand 2	C	487	490	parallel
Strand 3	C	463	465	parallel
Strand 4	C	541	543	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	605	606	first strand
Strand 2	C	662	663	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	727	728	first strand
Strand 2	C	736	737	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	168	173	first strand
Strand 2	D	200	205	parallel
Strand 3	D	100	102	parallel
Strand 4	D	59	63	parallel
Strand 5	D	248	253	parallel
Strand 6	D	311	316	parallel
Strand 7	D	334	337	anti-parallel
Strand 8	D	273	275	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	744	749	first strand
Strand 2	D	450	458	anti-parallel
Strand 3	D	440	447	anti-parallel
Strand 4	D	771	772	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	519	521	first strand
Strand 2	D	487	490	parallel
Strand 3	D	463	465	parallel
Strand 4	D	541	543	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	605	606	first strand
Strand 2	D	662	663	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	727	728	first strand
Strand 2	D	736	737	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7F5V

Analysis of interatomic Contacts of Structural Units in PDB entry:
7F5V