Analysis of interatomic Contacts of Structural Units in PDB entry:
7F60

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7F60 entry

There are 6 chains in PDB entry 7F60 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 31	ARG 365
B	ASP 31	ARG 365
C	THR 158	LYS 213
D	THR 158	LYS 213
E	ASP 53	ASP 61
F	GLU 55	ASP 61

There are 8 helices in PDB entry 7F60. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	249	254	Right-handed alpha
Helix 2	AA2	A	341	345	Right-handed 310
Helix 3	AA3	A	359	363	Right-handed 310
Helix 4	AA4	B	249	254	Right-handed alpha
Helix 5	AA5	C	188	192	Right-handed 310
Helix 6	AA6	C	199	210	Right-handed alpha
Helix 7	AA7	D	188	196	Right-handed 310
Helix 8	AA8	D	199	210	Right-handed alpha

There are 16 sheets in PDB entry 7F60. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	33	first strand
Strand 2	A	352	356	anti-parallel
Strand 3	A	330	334	anti-parallel
Strand 4	A	318	323	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	47	first strand
Strand 2	A	55	61	anti-parallel
Strand 3	A	65	71	anti-parallel
Strand 4	A	77	84	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	94	first strand
Strand 2	A	100	105	anti-parallel
Strand 3	A	109	114	anti-parallel
Strand 4	A	119	125	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	137	first strand
Strand 2	A	142	148	anti-parallel
Strand 3	A	152	156	anti-parallel
Strand 4	A	165	168	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	179	first strand
Strand 2	A	182	187	anti-parallel
Strand 3	A	191	196	anti-parallel
Strand 4	A	202	206	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	222	first strand
Strand 2	A	228	235	anti-parallel
Strand 3	A	239	244	anti-parallel
Strand 4	A	255	258	anti-parallel
Strand 5	E	60	61	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	262	first strand
Strand 2	A	271	273	anti-parallel
Strand 3	D	180	186	parallel
Strand 4	D	168	173	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	281	first strand
Strand 2	A	288	292	anti-parallel
Strand 3	A	297	301	anti-parallel
Strand 4	A	306	310	anti-parallel
Strand 5	E	56	57	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	33	first strand
Strand 2	B	352	356	anti-parallel
Strand 3	B	330	334	anti-parallel
Strand 4	B	322	323	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	47	first strand
Strand 2	B	55	61	anti-parallel
Strand 3	B	65	71	anti-parallel
Strand 4	B	77	84	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	94	first strand
Strand 2	B	100	105	anti-parallel
Strand 3	B	109	114	anti-parallel
Strand 4	B	119	125	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	137	first strand
Strand 2	B	142	148	anti-parallel
Strand 3	B	152	156	anti-parallel
Strand 4	B	165	168	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	179	first strand
Strand 2	B	182	187	anti-parallel
Strand 3	B	193	196	anti-parallel
Strand 4	B	202	206	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	222	first strand
Strand 2	B	228	235	anti-parallel
Strand 3	B	239	244	anti-parallel
Strand 4	B	255	258	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	261	262	first strand
Strand 2	B	271	273	anti-parallel
Strand 3	C	182	186	parallel
Strand 4	C	168	171	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	281	first strand
Strand 2	B	288	292	anti-parallel
Strand 3	B	297	301	anti-parallel
Strand 4	B	306	310	anti-parallel
Strand 5	F	56	57	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7F60

Analysis of interatomic Contacts of Structural Units in PDB entry:
7F60