Analysis of interatomic Contacts of Structural Units in PDB entry:
7F6D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7F6D entry

There are 8 chains in PDB entry 7F6D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	PRO 9	THR 344
G	PRO 9	THR 344
B	ALA 12	ARG 598
A	ALA 12	ARG 598
C	ALA 12	ARG 598
E	ALA 12	ARG 598
F	ALA 12	ARG 598
D	ALA 12	ARG 598

There are133 helices in PDB entry 7F6D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	148	163	Right-handed alpha
Helix 2	AA2	H	209	219	Right-handed alpha
Helix 3	AA3	H	281	286	Right-handed alpha
Helix 4	AA4	H	286	301	Right-handed alpha
Helix 5	AA5	H	314	328	Right-handed alpha
Helix 6	AA6	H	330	344	Right-handed alpha
Helix 7	AA7	G	147	163	Right-handed alpha
Helix 8	AA8	G	209	219	Right-handed alpha
Helix 9	AA9	G	281	286	Right-handed alpha
Helix 10	AB1	G	286	301	Right-handed alpha
Helix 11	AB2	G	314	328	Right-handed alpha
Helix 12	AB3	G	330	344	Right-handed alpha
Helix 13	AB4	B	79	86	Right-handed alpha
Helix 14	AB5	B	121	128	Right-handed alpha
Helix 15	AB6	B	153	157	Right-handed alpha
Helix 16	AB7	B	175	189	Right-handed alpha
Helix 17	AB8	B	190	197	Right-handed alpha
Helix 18	AB9	B	229	243	Right-handed alpha
Helix 19	AC1	B	247	253	Right-handed alpha
Helix 20	AC2	B	267	275	Right-handed alpha
Helix 21	AC3	B	294	302	Right-handed alpha
Helix 22	AC4	B	304	308	Right-handed 310
Helix 23	AC5	B	316	335	Right-handed alpha
Helix 24	AC6	B	377	387	Right-handed alpha
Helix 25	AC7	B	408	423	Right-handed alpha
Helix 26	AC8	B	424	426	Right-handed 310
Helix 27	AC9	B	454	476	Right-handed alpha
Helix 28	AD1	B	488	493	Right-handed alpha
Helix 29	AD2	B	501	512	Right-handed alpha
Helix 30	AD3	B	530	537	Right-handed alpha
Helix 31	AD4	B	552	556	Right-handed 310
Helix 32	AD5	B	559	567	Right-handed alpha
Helix 33	AD6	A	79	86	Right-handed alpha
Helix 34	AD7	A	121	128	Right-handed alpha
Helix 35	AD8	A	152	157	Right-handed alpha
Helix 36	AD9	A	174	189	Right-handed alpha
Helix 37	AE1	A	190	197	Right-handed alpha
Helix 38	AE2	A	218	222	Right-handed 310
Helix 39	AE3	A	229	243	Right-handed alpha
Helix 40	AE4	A	247	253	Right-handed alpha
Helix 41	AE5	A	267	275	Right-handed alpha
Helix 42	AE6	A	294	302	Right-handed alpha
Helix 43	AE7	A	304	308	Right-handed 310
Helix 44	AE8	A	316	335	Right-handed alpha
Helix 45	AE9	A	377	387	Right-handed alpha
Helix 46	AF1	A	408	423	Right-handed alpha
Helix 47	AF2	A	454	476	Right-handed alpha
Helix 48	AF3	A	499	512	Right-handed alpha
Helix 49	AF4	A	530	536	Right-handed alpha
Helix 50	AF5	A	552	556	Right-handed 310
Helix 51	AF6	A	562	567	Right-handed alpha
Helix 52	AF7	C	79	84	Right-handed alpha
Helix 53	AF8	C	121	128	Right-handed alpha
Helix 54	AF9	C	152	157	Right-handed alpha
Helix 55	AG1	C	174	189	Right-handed alpha
Helix 56	AG2	C	190	197	Right-handed alpha
Helix 57	AG3	C	218	222	Right-handed 310
Helix 58	AG4	C	229	243	Right-handed alpha
Helix 59	AG5	C	247	253	Right-handed alpha
Helix 60	AG6	C	267	275	Right-handed alpha
Helix 61	AG7	C	294	301	Right-handed alpha
Helix 62	AG8	C	304	308	Right-handed 310
Helix 63	AG9	C	316	335	Right-handed alpha
Helix 64	AH1	C	377	387	Right-handed alpha
Helix 65	AH2	C	408	419	Right-handed alpha
Helix 66	AH3	C	420	422	Right-handed 310
Helix 67	AH4	C	454	459	Right-handed alpha
Helix 68	AH5	C	459	476	Right-handed alpha
Helix 69	AH6	C	499	512	Right-handed alpha
Helix 70	AH7	C	530	536	Right-handed alpha
Helix 71	AH8	C	548	556	Right-handed 310
Helix 72	AH9	C	562	567	Right-handed alpha
Helix 73	AI1	E	79	86	Right-handed alpha
Helix 74	AI2	E	121	128	Right-handed alpha
Helix 75	AI3	E	129	133	Right-handed 310
Helix 76	AI4	E	175	190	Right-handed alpha
Helix 77	AI5	E	190	197	Right-handed alpha
Helix 78	AI6	E	218	222	Right-handed 310
Helix 79	AI7	E	229	243	Right-handed alpha
Helix 80	AI8	E	247	253	Right-handed alpha
Helix 81	AI9	E	267	275	Right-handed alpha
Helix 82	AJ1	E	294	301	Right-handed alpha
Helix 83	AJ2	E	304	308	Right-handed 310
Helix 84	AJ3	E	316	335	Right-handed alpha
Helix 85	AJ4	E	377	387	Right-handed alpha
Helix 86	AJ5	E	408	423	Right-handed alpha
Helix 87	AJ6	E	454	476	Right-handed alpha
Helix 88	AJ7	E	488	493	Right-handed alpha
Helix 89	AJ8	E	499	511	Right-handed alpha
Helix 90	AJ9	E	530	537	Right-handed alpha
Helix 91	AK1	E	552	556	Right-handed 310
Helix 92	AK2	E	559	561	Right-handed 310
Helix 93	AK3	E	562	567	Right-handed alpha
Helix 94	AK4	F	79	86	Right-handed alpha
Helix 95	AK5	F	121	128	Right-handed alpha
Helix 96	AK6	F	129	133	Right-handed 310
Helix 97	AK7	F	175	190	Right-handed alpha
Helix 98	AK8	F	190	197	Right-handed alpha
Helix 99	AK9	F	218	222	Right-handed 310
Helix 100	AL1	F	229	243	Right-handed alpha
Helix 101	AL2	F	247	253	Right-handed alpha
Helix 102	AL3	F	267	275	Right-handed alpha
Helix 103	AL4	F	294	302	Right-handed alpha
Helix 104	AL5	F	316	335	Right-handed alpha
Helix 105	AL6	F	377	386	Right-handed alpha
Helix 106	AL7	F	408	423	Right-handed alpha
Helix 107	AL8	F	454	476	Right-handed alpha
Helix 108	AL9	F	488	493	Right-handed alpha
Helix 109	AM1	F	499	511	Right-handed alpha
Helix 110	AM2	F	530	536	Right-handed alpha
Helix 111	AM3	F	548	556	Right-handed 310
Helix 112	AM4	F	559	561	Right-handed 310
Helix 113	AM5	F	562	567	Right-handed alpha
Helix 114	AM6	D	79	86	Right-handed alpha
Helix 115	AM7	D	121	128	Right-handed alpha
Helix 116	AM8	D	153	157	Right-handed alpha
Helix 117	AM9	D	175	189	Right-handed alpha
Helix 118	AN1	D	190	197	Right-handed alpha
Helix 119	AN2	D	229	243	Right-handed alpha
Helix 120	AN3	D	247	253	Right-handed alpha
Helix 121	AN4	D	267	275	Right-handed alpha
Helix 122	AN5	D	294	302	Right-handed alpha
Helix 123	AN6	D	304	308	Right-handed 310
Helix 124	AN7	D	316	335	Right-handed alpha
Helix 125	AN8	D	377	387	Right-handed alpha
Helix 126	AN9	D	408	423	Right-handed alpha
Helix 127	AO1	D	424	426	Right-handed 310
Helix 128	AO2	D	454	476	Right-handed alpha
Helix 129	AO3	D	488	493	Right-handed alpha
Helix 130	AO4	D	501	512	Right-handed alpha
Helix 131	AO5	D	530	537	Right-handed alpha
Helix 132	AO6	D	552	556	Right-handed 310
Helix 133	AO7	D	559	567	Right-handed alpha

There are 22 sheets in PDB entry 7F6D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	G	61	64	anti-parallel
Strand 3	G	72	75	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	95	103	first strand
Strand 2	H	78	86	anti-parallel
Strand 3	H	48	57	anti-parallel
Strand 4	H	179	184	parallel
Strand 5	H	197	200	parallel
Strand 6	H	268	275	anti-parallel
Strand 7	H	247	254	anti-parallel
Strand 8	H	228	230	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	61	64	first strand
Strand 2	H	72	75	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	95	103	first strand
Strand 2	G	78	86	anti-parallel
Strand 3	G	48	57	anti-parallel
Strand 4	G	179	184	parallel
Strand 5	G	197	199	parallel
Strand 6	G	268	275	anti-parallel
Strand 7	G	247	254	anti-parallel
Strand 8	G	228	230	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	18	first strand
Strand 2	B	28	33	anti-parallel
Strand 3	B	92	102	anti-parallel
Strand 4	B	56	69	anti-parallel
Strand 5	B	44	50	anti-parallel
Strand 6	B	115	118	anti-parallel
Strand 7	B	16	18	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	142	first strand
Strand 2	B	148	152	anti-parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	289	290	first strand
Strand 2	B	262	266	parallel
Strand 3	B	445	449	parallel
Strand 4	B	210	215	parallel
Strand 5	B	482	486	parallel
Strand 6	B	517	523	parallel
Strand 7	B	164	168	parallel
Strand 8	B	539	543	parallel
Strand 9	B	573	577	anti-parallel
Strand 10	B	585	588	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	17	first strand
Strand 2	A	28	33	anti-parallel
Strand 3	A	92	102	anti-parallel
Strand 4	A	56	69	anti-parallel
Strand 5	A	44	50	anti-parallel
Strand 6	A	115	117	anti-parallel
Strand 7	A	16	17	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	142	first strand
Strand 2	A	148	151	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	265	first strand
Strand 2	A	447	449	parallel
Strand 3	A	210	215	parallel
Strand 4	A	482	485	parallel
Strand 5	A	517	522	parallel
Strand 6	A	164	168	parallel
Strand 7	A	539	543	parallel
Strand 8	A	574	577	anti-parallel
Strand 9	A	585	587	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	17	first strand
Strand 2	C	28	33	anti-parallel
Strand 3	C	92	102	anti-parallel
Strand 4	C	56	69	anti-parallel
Strand 5	C	44	50	anti-parallel
Strand 6	C	115	117	anti-parallel
Strand 7	C	16	17	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	138	142	first strand
Strand 2	C	148	151	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	264	265	first strand
Strand 2	C	447	449	parallel
Strand 3	C	209	215	parallel
Strand 4	C	481	485	parallel
Strand 5	C	517	522	parallel
Strand 6	C	164	168	parallel
Strand 7	C	539	543	parallel
Strand 8	C	574	577	anti-parallel
Strand 9	C	585	587	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	28	32	first strand
Strand 2	E	90	102	anti-parallel
Strand 3	E	56	71	anti-parallel
Strand 4	E	43	50	anti-parallel
Strand 5	E	116	118	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	137	142	first strand
Strand 2	E	148	152	anti-parallel

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There are 10 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	289	290	first strand
Strand 2	E	264	266	parallel
Strand 3	E	445	449	parallel
Strand 4	E	210	215	parallel
Strand 5	E	482	485	parallel
Strand 6	E	517	523	parallel
Strand 7	E	164	168	parallel
Strand 8	E	539	543	parallel
Strand 9	E	573	577	anti-parallel
Strand 10	E	585	588	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	31	32	first strand
Strand 2	F	90	102	anti-parallel
Strand 3	F	56	71	anti-parallel
Strand 4	F	43	50	anti-parallel
Strand 5	F	116	118	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	137	142	first strand
Strand 2	F	148	152	anti-parallel

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There are 10 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	289	290	first strand
Strand 2	F	262	266	parallel
Strand 3	F	445	449	parallel
Strand 4	F	210	215	parallel
Strand 5	F	482	485	parallel
Strand 6	F	517	522	parallel
Strand 7	F	163	168	parallel
Strand 8	F	537	543	parallel
Strand 9	F	573	578	anti-parallel
Strand 10	F	581	588	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	18	first strand
Strand 2	D	28	33	anti-parallel
Strand 3	D	92	102	anti-parallel
Strand 4	D	56	69	anti-parallel
Strand 5	D	44	50	anti-parallel
Strand 6	D	115	118	anti-parallel
Strand 7	D	16	18	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	142	first strand
Strand 2	D	148	152	anti-parallel

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There are 10 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	289	290	first strand
Strand 2	D	262	266	parallel
Strand 3	D	445	449	parallel
Strand 4	D	210	215	parallel
Strand 5	D	482	486	parallel
Strand 6	D	517	523	parallel
Strand 7	D	164	168	parallel
Strand 8	D	539	543	parallel
Strand 9	D	573	577	anti-parallel
Strand 10	D	585	588	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7F6D

Analysis of interatomic Contacts of Structural Units in PDB entry:
7F6D