Analysis of interatomic Contacts of Structural Units in PDB entry:
7F6F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7F6F entry

There are 2 chains in PDB entry 7F6F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 2ARG 338
B
 SER 3ARG 338
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 7F6F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 19Right-handed alpha
Helix 2
AA2
A
28 43Right-handed alpha
Helix 3
AA3
A
54 68Right-handed alpha
Helix 4
AA4
A
80 89Right-handed alpha
Helix 5
AA5
A
105 107Right-handed 310
Helix 6
AA6
A
132 136Right-handed 310
Helix 7
AA7
A
139 147Right-handed alpha
Helix 8
AA8
A
148 153Right-handed 310
Helix 9
AA9
A
164 178Right-handed alpha
Helix 10
AB1
A
179 191Right-handed alpha
Helix 11
AB2
A
198 208Right-handed alpha
Helix 12
AB3
A
219 227Right-handed alpha
Helix 13
AB4
A
256 269Right-handed alpha
Helix 14
AB5
A
269 279Right-handed alpha
Helix 15
AB6
A
294 303Right-handed alpha
Helix 16
AB7
A
304 306Right-handed 310
Helix 17
AB8
A
314 321Right-handed 310
Helix 18
AB9
A
322 338Right-handed alpha
Helix 19
AC1
B
8 19Right-handed alpha
Helix 20
AC2
B
28 43Right-handed alpha
Helix 21
AC3
B
54 68Right-handed alpha
Helix 22
AC4
B
80 89Right-handed alpha
Helix 23
AC5
B
105 107Right-handed 310
Helix 24
AC6
B
132 136Right-handed 310
Helix 25
AC7
B
139 147Right-handed alpha
Helix 26
AC8
B
148 153Right-handed 310
Helix 27
AC9
B
164 178Right-handed alpha
Helix 28
AD1
B
179 191Right-handed alpha
Helix 29
AD2
B
198 209Right-handed alpha
Helix 30
AD3
B
219 227Right-handed alpha
Helix 31
AD4
B
256 269Right-handed alpha
Helix 32
AD5
B
269 279Right-handed alpha
Helix 33
AD6
B
294 303Right-handed alpha
Helix 34
AD7
B
304 306Right-handed 310
Helix 35
AD8
B
314 321Right-handed 310
Helix 36
AD9
B
322 338Right-handed alpha
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There are 6 sheets in PDB entry 7F6F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 52first strand
Strand 2
A
20 25parallel
Strand 3
A
75 78parallel
Strand 4
A
247 250anti-parallel
Strand 5
A
114 116anti-parallel
Strand 6
A
109 110anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 196first strand
Strand 2
A
156 159parallel
Strand 3
A
213 218parallel
Strand 4
A
120 127anti-parallel
Strand 5
A
232 235anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 196first strand
Strand 2
A
156 159parallel
Strand 3
A
213 218parallel
Strand 4
A
120 127anti-parallel
Strand 5
A
241 244anti-parallel
Strand 6
A
308 310parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 52first strand
Strand 2
B
20 25parallel
Strand 3
B
75 78parallel
Strand 4
B
247 250anti-parallel
Strand 5
B
114 116anti-parallel
Strand 6
B
109 110anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 196first strand
Strand 2
B
156 159parallel
Strand 3
B
213 218parallel
Strand 4
B
120 127anti-parallel
Strand 5
B
232 235anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 196first strand
Strand 2
B
156 159parallel
Strand 3
B
213 218parallel
Strand 4
B
120 127anti-parallel
Strand 5
B
241 244anti-parallel
Strand 6
B
308 310parallel
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