Analysis of interatomic Contacts of Structural Units in PDB entry:
7F79

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7F79 entry

There are 6 chains in PDB entry 7F79 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PHE 456
B	SER -1	PHE 456
C	SER -1	PHE 456
D	LEU 3	PHE 456
E	LEU 3	PHE 456
F	VAL 2	PHE 456

There are129 helices in PDB entry 7F79. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	22	Right-handed alpha
Helix 2	AA2	A	24	29	Right-handed alpha
Helix 3	AA3	A	30	34	Right-handed 310
Helix 4	AA4	A	35	40	Right-handed alpha
Helix 5	AA5	A	87	105	Right-handed alpha
Helix 6	AA6	A	124	140	Right-handed alpha
Helix 7	AA7	A	141	143	Right-handed 310
Helix 8	AA8	A	157	173	Right-handed alpha
Helix 9	AA9	A	183	187	Right-handed 310
Helix 10	AB1	A	191	213	Right-handed alpha
Helix 11	AB2	A	229	242	Right-handed alpha
Helix 12	AB3	A	263	276	Right-handed alpha
Helix 13	AB4	A	279	287	Right-handed alpha
Helix 14	AB5	A	288	292	Right-handed 310
Helix 15	AB6	A	304	309	Right-handed 310
Helix 16	AB7	A	325	335	Right-handed alpha
Helix 17	AB8	A	349	364	Right-handed alpha
Helix 18	AB9	A	369	374	Right-handed alpha
Helix 19	AC1	A	375	391	Right-handed alpha
Helix 20	AC2	A	395	421	Right-handed alpha
Helix 21	AC3	A	432	452	Right-handed alpha
Helix 22	AC4	B	6	22	Right-handed alpha
Helix 23	AC5	B	24	29	Right-handed alpha
Helix 24	AC6	B	30	34	Right-handed 310
Helix 25	AC7	B	35	40	Right-handed alpha
Helix 26	AC8	B	87	105	Right-handed alpha
Helix 27	AC9	B	124	140	Right-handed alpha
Helix 28	AD1	B	141	143	Right-handed 310
Helix 29	AD2	B	157	173	Right-handed alpha
Helix 30	AD3	B	183	187	Right-handed 310
Helix 31	AD4	B	194	212	Right-handed alpha
Helix 32	AD5	B	229	242	Right-handed alpha
Helix 33	AD6	B	263	275	Right-handed alpha
Helix 34	AD7	B	279	287	Right-handed alpha
Helix 35	AD8	B	288	292	Right-handed 310
Helix 36	AD9	B	304	308	Right-handed 310
Helix 37	AE1	B	325	335	Right-handed alpha
Helix 38	AE2	B	349	364	Right-handed alpha
Helix 39	AE3	B	369	374	Right-handed alpha
Helix 40	AE4	B	375	391	Right-handed alpha
Helix 41	AE5	B	395	421	Right-handed alpha
Helix 42	AE6	B	432	452	Right-handed alpha
Helix 43	AE7	C	6	22	Right-handed alpha
Helix 44	AE8	C	24	29	Right-handed alpha
Helix 45	AE9	C	30	34	Right-handed 310
Helix 46	AF1	C	35	40	Right-handed alpha
Helix 47	AF2	C	87	105	Right-handed alpha
Helix 48	AF3	C	124	140	Right-handed alpha
Helix 49	AF4	C	141	143	Right-handed 310
Helix 50	AF5	C	157	173	Right-handed alpha
Helix 51	AF6	C	183	187	Right-handed 310
Helix 52	AF7	C	191	213	Right-handed alpha
Helix 53	AF8	C	229	242	Right-handed alpha
Helix 54	AF9	C	263	276	Right-handed alpha
Helix 55	AG1	C	279	287	Right-handed alpha
Helix 56	AG2	C	288	292	Right-handed 310
Helix 57	AG3	C	304	309	Right-handed 310
Helix 58	AG4	C	325	335	Right-handed alpha
Helix 59	AG5	C	349	359	Right-handed alpha
Helix 60	AG6	C	359	364	Right-handed alpha
Helix 61	AG7	C	369	374	Right-handed alpha
Helix 62	AG8	C	375	391	Right-handed alpha
Helix 63	AG9	C	395	421	Right-handed alpha
Helix 64	AH1	C	432	452	Right-handed alpha
Helix 65	AH2	D	6	22	Right-handed alpha
Helix 66	AH3	D	24	29	Right-handed alpha
Helix 67	AH4	D	30	34	Right-handed 310
Helix 68	AH5	D	35	40	Right-handed alpha
Helix 69	AH6	D	87	105	Right-handed alpha
Helix 70	AH7	D	124	140	Right-handed alpha
Helix 71	AH8	D	141	143	Right-handed 310
Helix 72	AH9	D	157	173	Right-handed alpha
Helix 73	AI1	D	183	187	Right-handed 310
Helix 74	AI2	D	191	212	Right-handed alpha
Helix 75	AI3	D	229	242	Right-handed alpha
Helix 76	AI4	D	263	275	Right-handed alpha
Helix 77	AI5	D	279	287	Right-handed alpha
Helix 78	AI6	D	288	292	Right-handed 310
Helix 79	AI7	D	304	309	Right-handed 310
Helix 80	AI8	D	325	335	Right-handed alpha
Helix 81	AI9	D	349	359	Right-handed alpha
Helix 82	AJ1	D	359	364	Right-handed alpha
Helix 83	AJ2	D	369	374	Right-handed alpha
Helix 84	AJ3	D	375	391	Right-handed alpha
Helix 85	AJ4	D	395	421	Right-handed alpha
Helix 86	AJ5	D	432	452	Right-handed alpha
Helix 87	AJ6	E	6	22	Right-handed alpha
Helix 88	AJ7	E	24	29	Right-handed alpha
Helix 89	AJ8	E	30	34	Right-handed 310
Helix 90	AJ9	E	35	40	Right-handed alpha
Helix 91	AK1	E	87	105	Right-handed alpha
Helix 92	AK2	E	124	140	Right-handed alpha
Helix 93	AK3	E	141	143	Right-handed 310
Helix 94	AK4	E	157	173	Right-handed alpha
Helix 95	AK5	E	183	187	Right-handed 310
Helix 96	AK6	E	194	213	Right-handed alpha
Helix 97	AK7	E	229	242	Right-handed alpha
Helix 98	AK8	E	263	275	Right-handed alpha
Helix 99	AK9	E	279	287	Right-handed alpha
Helix 100	AL1	E	287	293	Right-handed alpha
Helix 101	AL2	E	304	309	Right-handed 310
Helix 102	AL3	E	325	335	Right-handed alpha
Helix 103	AL4	E	349	359	Right-handed alpha
Helix 104	AL5	E	359	364	Right-handed alpha
Helix 105	AL6	E	369	374	Right-handed alpha
Helix 106	AL7	E	375	391	Right-handed alpha
Helix 107	AL8	E	395	421	Right-handed alpha
Helix 108	AL9	E	432	452	Right-handed alpha
Helix 109	AM1	F	6	22	Right-handed alpha
Helix 110	AM2	F	24	29	Right-handed alpha
Helix 111	AM3	F	30	34	Right-handed 310
Helix 112	AM4	F	35	40	Right-handed alpha
Helix 113	AM5	F	87	105	Right-handed alpha
Helix 114	AM6	F	124	140	Right-handed alpha
Helix 115	AM7	F	141	143	Right-handed 310
Helix 116	AM8	F	157	173	Right-handed alpha
Helix 117	AM9	F	183	187	Right-handed 310
Helix 118	AN1	F	191	213	Right-handed alpha
Helix 119	AN2	F	229	242	Right-handed alpha
Helix 120	AN3	F	263	275	Right-handed alpha
Helix 121	AN4	F	279	287	Right-handed alpha
Helix 122	AN5	F	288	292	Right-handed 310
Helix 123	AN6	F	304	309	Right-handed 310
Helix 124	AN7	F	325	335	Right-handed alpha
Helix 125	AN8	F	349	364	Right-handed alpha
Helix 126	AN9	F	369	374	Right-handed alpha
Helix 127	AO1	F	375	391	Right-handed alpha
Helix 128	AO2	F	395	421	Right-handed alpha
Helix 129	AO3	F	432	452	Right-handed alpha

There are 9 sheets in PDB entry 7F79. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	151	first strand
Strand 2	A	76	82	parallel
Strand 3	A	110	116	parallel
Strand 4	A	59	70	anti-parallel
Strand 5	A	44	53	anti-parallel
Strand 6	B	44	53	anti-parallel
Strand 7	B	59	70	anti-parallel
Strand 8	B	110	116	anti-parallel
Strand 9	B	76	82	parallel
Strand 10	B	148	151	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	301	first strand
Strand 2	A	254	257	anti-parallel
Strand 3	A	245	250	anti-parallel
Strand 4	A	222	225	parallel
Strand 5	A	314	316	parallel
Strand 6	A	339	341	parallel
Strand 7	A	366	368	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	301	first strand
Strand 2	B	254	257	anti-parallel
Strand 3	B	245	250	anti-parallel
Strand 4	B	222	226	parallel
Strand 5	B	314	317	parallel
Strand 6	B	339	341	parallel
Strand 7	B	366	368	parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	151	first strand
Strand 2	C	76	82	parallel
Strand 3	C	110	116	parallel
Strand 4	C	59	70	anti-parallel
Strand 5	C	44	53	anti-parallel
Strand 6	D	44	53	anti-parallel
Strand 7	D	59	70	anti-parallel
Strand 8	D	110	116	anti-parallel
Strand 9	D	76	82	parallel
Strand 10	D	148	151	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	298	301	first strand
Strand 2	C	254	257	anti-parallel
Strand 3	C	245	250	anti-parallel
Strand 4	C	222	225	parallel
Strand 5	C	314	316	parallel
Strand 6	C	339	341	parallel
Strand 7	C	366	368	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	298	301	first strand
Strand 2	D	254	257	anti-parallel
Strand 3	D	245	250	anti-parallel
Strand 4	D	222	225	parallel
Strand 5	D	314	316	parallel
Strand 6	D	339	341	parallel
Strand 7	D	366	368	parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	148	151	first strand
Strand 2	E	76	82	parallel
Strand 3	E	110	116	parallel
Strand 4	E	59	70	anti-parallel
Strand 5	E	44	53	anti-parallel
Strand 6	F	44	53	anti-parallel
Strand 7	F	59	70	anti-parallel
Strand 8	F	110	116	anti-parallel
Strand 9	F	76	82	parallel
Strand 10	F	148	151	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	298	301	first strand
Strand 2	E	254	257	anti-parallel
Strand 3	E	245	250	anti-parallel
Strand 4	E	222	225	parallel
Strand 5	E	314	316	parallel
Strand 6	E	339	341	parallel
Strand 7	E	366	368	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	298	301	first strand
Strand 2	F	254	257	anti-parallel
Strand 3	F	245	250	anti-parallel
Strand 4	F	222	225	parallel
Strand 5	F	314	316	parallel
Strand 6	F	339	341	parallel
Strand 7	F	366	368	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7F79

Analysis of interatomic Contacts of Structural Units in PDB entry:
7F79