Analysis of interatomic Contacts of Structural Units in PDB entry:
7F7F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7F7F entry

There are 2 chains in PDB entry 7F7F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 167VAL 1437
B
 ASN 50TRP 411
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 7F7F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
186 190Right-handed 310
Helix 2
AA2
A
221 232Right-handed alpha
Helix 3
AA3
A
247 255Right-handed alpha
Helix 4
AA4
A
256 262Right-handed alpha
Helix 5
AA5
A
426 430Right-handed 310
Helix 6
AA6
A
452 456Right-handed 310
Helix 7
AA7
A
501 503Right-handed 310
Helix 8
AA8
A
530 535Right-handed alpha
Helix 9
AA9
A
548 576Right-handed alpha
Helix 10
AB1
A
599 604Right-handed alpha
Helix 11
AB2
A
612 629Right-handed alpha
Helix 12
AB3
A
655 659Right-handed 310
Helix 13
AB4
A
667 672Right-handed alpha
Helix 14
AB5
A
710 723Right-handed alpha
Helix 15
AB6
A
761 766Right-handed alpha
Helix 16
AB7
A
766 777Right-handed alpha
Helix 17
AB8
A
800 812Right-handed alpha
Helix 18
AB9
A
892 906Right-handed alpha
Helix 19
AC1
A
921 929Right-handed alpha
Helix 20
AC2
A
929 934Right-handed alpha
Helix 21
AC3
A
943 951Right-handed alpha
Helix 22
AC4
A
970 979Right-handed alpha
Helix 23
AC5
A
996 1003Right-handed alpha
Helix 24
AC6
A
1031 1047Right-handed alpha
Helix 25
AC7
A
1074 1079Right-handed alpha
Helix 26
AC8
A
1086 1095Right-handed alpha
Helix 27
AC9
A
1108 1121Right-handed alpha
Helix 28
AD1
A
1134 1141Right-handed alpha
Helix 29
AD2
A
1153 1158Right-handed alpha
Helix 30
AD3
A
1165 1167Right-handed 310
Helix 31
AD4
A
1168 1173Right-handed alpha
Helix 32
AD5
A
1178 1183Right-handed alpha
Helix 33
AD6
A
1183 1188Right-handed alpha
Helix 34
AD7
A
1200 1205Right-handed alpha
Helix 35
AD8
A
1232 1237Right-handed alpha
Helix 36
AD9
A
1245 1250Right-handed alpha
Helix 37
AE1
A
1252 1255Right-handed 310
Helix 38
AE2
A
1256 1261Right-handed alpha
Helix 39
AE3
A
1266 1287Right-handed alpha
Helix 40
AE4
A
1316 1321Right-handed alpha
Helix 41
AE5
A
1324 1331Right-handed alpha
Helix 42
AE6
A
1348 1357Right-handed alpha
Helix 43
AE7
A
1377 1382Right-handed alpha
Helix 44
AE8
A
1384 1395Right-handed alpha
Helix 45
AE9
A
1395 1404Right-handed alpha
Helix 46
AF1
A
1406 1418Right-handed alpha
Helix 47
AF2
B
75 97Right-handed alpha
Helix 48
AF3
B
194 199Right-handed alpha
Helix 49
AF4
B
205 210Right-handed alpha
Helix 50
AF5
B
232 237Right-handed alpha
Helix 51
AF6
B
266 270Right-handed 310
Helix 52
AF7
B
308 313Right-handed alpha
Helix 53
AF8
B
350 354Right-handed 310
Helix 54
AF9
B
372 377Right-handed alpha
Helix 55
AG1
B
377 383Right-handed alpha
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There are 12 sheets in PDB entry 7F7F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
409 410first strand
Strand 2
A
517 518anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 420first strand
Strand 2
A
505 506anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
487 488first strand
Strand 2
A
495 496anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1071 1072first strand
Strand 2
A
1101 1102parallel
Strand 3
A
984 988parallel
Strand 4
A
663 666parallel
Strand 5
A
1126 1129parallel
Strand 6
A
1143 1146parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
673 683first strand
Strand 2
A
956 967anti-parallel
Strand 3
A
909 915anti-parallel
Strand 4
A
869 872anti-parallel
Strand 5
A
848 849anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
823 824first strand
Strand 2
A
833 834anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
836 839first strand
Strand 2
A
851 853anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 127first strand
Strand 2
B
102 105anti-parallel
Strand 3
B
359 362anti-parallel
Strand 4
B
173 176anti-parallel
Strand 5
B
328 330anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 120first strand
Strand 2
B
141 142anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 161first strand
Strand 2
B
338 344anti-parallel
Strand 3
B
164 165anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 161first strand
Strand 2
B
338 344anti-parallel
Strand 3
B
246 249anti-parallel
Strand 4
B
257 258anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 228first strand
Strand 2
B
283 284parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il