Analysis of interatomic Contacts of Structural Units in PDB entry:
7F7R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7F7R entry

There is 1 chain in PDB entry 7F7R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 57SER 971
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 7F7R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
121 125Right-handed 310
Helix 2
AA2
A
126 131Right-handed alpha
Helix 3
AA3
A
179 181Right-handed 310
Helix 4
AA4
A
279 292Right-handed alpha
Helix 5
AA5
A
298 303Right-handed 310
Helix 6
AA6
A
338 342Right-handed 310
Helix 7
AA7
A
358 361Right-handed 310
Helix 8
AA8
A
362 373Right-handed alpha
Helix 9
AA9
A
395 413Right-handed alpha
Helix 10
AB1
A
439 446Right-handed alpha
Helix 11
AB2
A
455 460Right-handed alpha
Helix 12
AB3
A
463 481Right-handed alpha
Helix 13
AB4
A
497 501Right-handed 310
Helix 14
AB5
A
514 519Right-handed alpha
Helix 15
AB6
A
519 530Right-handed alpha
Helix 16
AB7
A
547 559Right-handed alpha
Helix 17
AB8
A
581 598Right-handed alpha
Helix 18
AB9
A
598 611Right-handed alpha
Helix 19
AC1
A
618 623Right-handed alpha
Helix 20
AC2
A
626 635Right-handed 310
Helix 21
AC3
A
717 721Right-handed 310
Helix 22
AC4
A
748 753Right-handed 310
Helix 23
AC5
A
822 829Right-handed alpha
Helix 24
AC6
A
842 850Right-handed alpha
Helix 25
AC7
A
905 909Right-handed 310
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There are 12 sheets in PDB entry 7F7R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 66first strand
Strand 2
A
71 75anti-parallel
Strand 3
A
80 87anti-parallel
Strand 4
A
90 95anti-parallel
Strand 5
A
270 276anti-parallel
Strand 6
A
239 243anti-parallel
Strand 7
A
228 235anti-parallel
Strand 8
A
196 201anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 137first strand
Strand 2
A
140 144anti-parallel
Strand 3
A
148 153anti-parallel
Strand 4
A
159 163anti-parallel
Strand 5
A
169 178anti-parallel
Strand 6
A
183 189anti-parallel
Strand 7
A
260 266anti-parallel
Strand 8
A
249 252anti-parallel
Strand 9
A
212 215anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 307first strand
Strand 2
A
379 381parallel
Strand 3
A
416 421parallel
Strand 4
A
451 454parallel
Strand 5
A
489 491parallel
Strand 6
A
503 505parallel
Strand 7
A
535 538parallel
Strand 8
A
563 567parallel
Strand 9
A
305 307parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 327first strand
Strand 2
A
333 337anti-parallel
Strand 3
A
314 318anti-parallel
Strand 4
A
348 349anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
510 511first strand
Strand 2
A
543 544parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
616 617first strand
Strand 2
A
638 640anti-parallel
Strand 3
A
644 646anti-parallel
Strand 4
A
701 704anti-parallel
Strand 5
A
673 676anti-parallel
Strand 6
A
682 684anti-parallel
Strand 7
A
885 886parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
660 662first strand
Strand 2
A
692 694anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
665 667first strand
Strand 2
A
687 689anti-parallel
Strand 3
A
934 939parallel
Strand 4
A
927 931anti-parallel
Strand 5
A
957 963anti-parallel
Strand 6
A
966 967anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
708 711first strand
Strand 2
A
725 730anti-parallel
Strand 3
A
790 798parallel
Strand 4
A
855 866anti-parallel
Strand 5
A
832 839anti-parallel
Strand 6
A
818 819parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
735 742first strand
Strand 2
A
755 763anti-parallel
Strand 3
A
781 783anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
735 742first strand
Strand 2
A
755 763anti-parallel
Strand 3
A
770 777anti-parallel
Strand 4
A
872 880anti-parallel
Strand 5
A
805 810anti-parallel
Strand 6
A
813 815anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
915 916first strand
Strand 2
A
944 945anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il