Analysis of interatomic Contacts of Structural Units in PDB entry:
7F87


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7F87 entry

There are 6 chains in PDB entry 7F87 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 89THR 200
A
 ALA 202LEU 233
B
 ASN 89THR 200
B
 ALA 202LEU 233
F
 ALA 84THR 86
G
 ALA 84THR 86
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 7F87. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
99 102Right-handed 310
Helix 2
AA2
A
112 119Right-handed alpha
Helix 3
AA3
A
148 154Right-handed 310
Helix 4
AA4
A
183 188Right-handed 310
Helix 5
AA5
A
225 230Right-handed alpha
Helix 6
AA6
A
231 233Right-handed 310
Helix 7
AA7
B
99 102Right-handed 310
Helix 8
AA8
B
112 119Right-handed alpha
Helix 9
AA9
B
148 154Right-handed 310
Helix 10
AB1
B
183 188Right-handed 310
Helix 11
AB2
B
225 230Right-handed alpha
Helix 12
AB3
B
231 233Right-handed 310
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There are 2 sheets in PDB entry 7F87. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 98first strand
Strand 2
A
103 108anti-parallel
Strand 3
A
120 122parallel
Strand 4
A
133 137anti-parallel
Strand 5
A
195 201parallel
Strand 6
A
210 223anti-parallel
Strand 7
A
167 180anti-parallel
Strand 8
A
159 163anti-parallel
Strand 9
A
94 98anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 98first strand
Strand 2
B
103 108anti-parallel
Strand 3
B
120 122parallel
Strand 4
B
133 137anti-parallel
Strand 5
B
195 201parallel
Strand 6
B
210 223anti-parallel
Strand 7
B
167 180anti-parallel
Strand 8
B
159 163anti-parallel
Strand 9
B
94 98anti-parallel
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