Analysis of interatomic Contacts of Structural Units in PDB entry:
7F88


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7F88 entry

There are 3 chains in PDB entry 7F88 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2CYS 205
B
 GLN 1CYS 205
C
 HIS -2CYS 205
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 7F88. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 6Right-handed 310
Helix 2
AA2
A
8 16Right-handed alpha
Helix 3
AA3
A
24 33Right-handed alpha
Helix 4
AA4
A
43 63Right-handed alpha
Helix 5
AA5
A
103 115Right-handed alpha
Helix 6
AA6
A
123 128Right-handed alpha
Helix 7
AA7
A
128 143Right-handed alpha
Helix 8
AA8
A
144 151Right-handed alpha
Helix 9
AA9
A
155 169Right-handed alpha
Helix 10
AB1
A
175 196Right-handed alpha
Helix 11
AB2
B
1 6Right-handed 310
Helix 12
AB3
B
8 16Right-handed alpha
Helix 13
AB4
B
24 34Right-handed alpha
Helix 14
AB5
B
43 62Right-handed alpha
Helix 15
AB6
B
103 115Right-handed alpha
Helix 16
AB7
B
123 128Right-handed alpha
Helix 17
AB8
B
128 143Right-handed alpha
Helix 18
AB9
B
144 151Right-handed alpha
Helix 19
AC1
B
155 169Right-handed alpha
Helix 20
AC2
B
175 196Right-handed alpha
Helix 21
AC3
C
2 6Right-handed 310
Helix 22
AC4
C
8 16Right-handed alpha
Helix 23
AC5
C
24 33Right-handed alpha
Helix 24
AC6
C
43 63Right-handed alpha
Helix 25
AC7
C
103 115Right-handed alpha
Helix 26
AC8
C
123 128Right-handed alpha
Helix 27
AC9
C
128 143Right-handed alpha
Helix 28
AD1
C
144 151Right-handed alpha
Helix 29
AD2
C
155 164Right-handed alpha
Helix 30
AD3
C
175 196Right-handed alpha
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There are no sheets in PDB entry 7F88
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il