Analysis of interatomic Contacts of Structural Units in PDB entry:
7F8D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7F8D entry

There are 4 chains in PDB entry 7F8D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS -1	GLU 311
B	MET 0	GLU 311
C	HIS -1	GLU 311
D	MET 0	GLU 311

There are 68 helices in PDB entry 7F8D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	26	Right-handed alpha
Helix 2	AA2	A	36	38	Right-handed 310
Helix 3	AA3	A	39	58	Right-handed alpha
Helix 4	AA4	A	68	73	Right-handed 310
Helix 5	AA5	A	91	114	Right-handed alpha
Helix 6	AA6	A	125	138	Right-handed alpha
Helix 7	AA7	A	140	142	Right-handed 310
Helix 8	AA8	A	148	165	Right-handed alpha
Helix 9	AA9	A	167	169	Right-handed 310
Helix 10	AB1	A	179	181	Right-handed 310
Helix 11	AB2	A	187	189	Right-handed 310
Helix 12	AB3	A	198	200	Right-handed 310
Helix 13	AB4	A	202	215	Right-handed alpha
Helix 14	AB5	A	215	225	Right-handed alpha
Helix 15	AB6	A	230	246	Right-handed alpha
Helix 16	AB7	A	261	263	Right-handed 310
Helix 17	AB8	A	289	308	Right-handed alpha
Helix 18	AB9	B	13	26	Right-handed alpha
Helix 19	AC1	B	36	38	Right-handed 310
Helix 20	AC2	B	39	58	Right-handed alpha
Helix 21	AC3	B	68	73	Right-handed 310
Helix 22	AC4	B	91	114	Right-handed alpha
Helix 23	AC5	B	125	138	Right-handed alpha
Helix 24	AC6	B	140	142	Right-handed 310
Helix 25	AC7	B	148	165	Right-handed alpha
Helix 26	AC8	B	167	171	Right-handed 310
Helix 27	AC9	B	179	183	Right-handed 310
Helix 28	AD1	B	187	189	Right-handed 310
Helix 29	AD2	B	198	200	Right-handed 310
Helix 30	AD3	B	202	215	Right-handed alpha
Helix 31	AD4	B	215	225	Right-handed alpha
Helix 32	AD5	B	230	246	Right-handed alpha
Helix 33	AD6	B	261	263	Right-handed 310
Helix 34	AD7	B	289	308	Right-handed alpha
Helix 35	AD8	C	13	26	Right-handed alpha
Helix 36	AD9	C	36	38	Right-handed 310
Helix 37	AE1	C	39	52	Right-handed alpha
Helix 38	AE2	C	53	58	Right-handed alpha
Helix 39	AE3	C	68	73	Right-handed 310
Helix 40	AE4	C	91	114	Right-handed alpha
Helix 41	AE5	C	125	138	Right-handed alpha
Helix 42	AE6	C	140	142	Right-handed 310
Helix 43	AE7	C	148	165	Right-handed alpha
Helix 44	AE8	C	167	169	Right-handed 310
Helix 45	AE9	C	187	189	Right-handed 310
Helix 46	AF1	C	198	200	Right-handed 310
Helix 47	AF2	C	202	215	Right-handed alpha
Helix 48	AF3	C	215	225	Right-handed alpha
Helix 49	AF4	C	230	246	Right-handed alpha
Helix 50	AF5	C	261	263	Right-handed 310
Helix 51	AF6	C	289	309	Right-handed alpha
Helix 52	AF7	D	13	26	Right-handed alpha
Helix 53	AF8	D	36	38	Right-handed 310
Helix 54	AF9	D	39	52	Right-handed alpha
Helix 55	AG1	D	53	58	Right-handed alpha
Helix 56	AG2	D	68	73	Right-handed 310
Helix 57	AG3	D	91	114	Right-handed alpha
Helix 58	AG4	D	125	138	Right-handed alpha
Helix 59	AG5	D	140	142	Right-handed 310
Helix 60	AG6	D	148	165	Right-handed alpha
Helix 61	AG7	D	167	169	Right-handed 310
Helix 62	AG8	D	179	181	Right-handed 310
Helix 63	AG9	D	187	189	Right-handed 310
Helix 64	AH1	D	198	200	Right-handed 310
Helix 65	AH2	D	202	225	Right-handed alpha
Helix 66	AH3	D	230	246	Right-handed alpha
Helix 67	AH4	D	261	263	Right-handed 310
Helix 68	AH5	D	289	309	Right-handed alpha

There are 16 sheets in PDB entry 7F8D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	66	first strand
Strand 2	A	30	34	parallel
Strand 3	A	6	10	parallel
Strand 4	A	77	80	parallel
Strand 5	A	118	121	parallel
Strand 6	A	144	146	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	172	first strand
Strand 2	A	191	192	anti-parallel
Strand 3	A	195	196	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	177	first strand
Strand 2	A	183	185	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	259	first strand
Strand 2	A	265	276	anti-parallel
Strand 3	A	279	283	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	66	first strand
Strand 2	B	30	34	parallel
Strand 3	B	6	10	parallel
Strand 4	B	77	80	parallel
Strand 5	B	118	121	parallel
Strand 6	B	144	146	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	176	first strand
Strand 2	B	184	185	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	195	196	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	259	first strand
Strand 2	B	265	276	anti-parallel
Strand 3	B	279	283	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	66	first strand
Strand 2	C	30	34	parallel
Strand 3	C	6	10	parallel
Strand 4	C	77	80	parallel
Strand 5	C	118	121	parallel
Strand 6	C	144	146	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	172	first strand
Strand 2	C	191	192	anti-parallel
Strand 3	C	195	196	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	176	first strand
Strand 2	C	184	185	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	250	259	first strand
Strand 2	C	265	276	anti-parallel
Strand 3	C	279	283	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	63	66	first strand
Strand 2	D	30	34	parallel
Strand 3	D	6	10	parallel
Strand 4	D	77	80	parallel
Strand 5	D	118	121	parallel
Strand 6	D	144	146	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	171	172	first strand
Strand 2	D	191	192	anti-parallel
Strand 3	D	195	196	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	175	177	first strand
Strand 2	D	183	185	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	250	259	first strand
Strand 2	D	265	276	anti-parallel
Strand 3	D	279	283	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7F8D

Analysis of interatomic Contacts of Structural Units in PDB entry:
7F8D