Analysis of interatomic Contacts of Structural Units in PDB entry:
7F8E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7F8E entry

There are 3 chains in PDB entry 7F8E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1LYS 223
B
 MSE 1LYS 223
C
 MSE 1LYS 223
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 7F8E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 18Right-handed alpha
Helix 2
AA2
A
20 24Right-handed 310
Helix 3
AA3
A
34 43Right-handed alpha
Helix 4
AA4
A
53 67Right-handed alpha
Helix 5
AA5
A
80 87Right-handed 310
Helix 6
AA6
A
99 113Right-handed alpha
Helix 7
AA7
A
135 148Right-handed alpha
Helix 8
AA8
A
166 188Right-handed alpha
Helix 9
AA9
A
203 210Right-handed alpha
Helix 10
AB1
A
218 223Right-handed alpha
Helix 11
AB2
B
2 18Right-handed alpha
Helix 12
AB3
B
20 24Right-handed 310
Helix 13
AB4
B
34 43Right-handed alpha
Helix 14
AB5
B
53 67Right-handed alpha
Helix 15
AB6
B
80 87Right-handed 310
Helix 16
AB7
B
99 113Right-handed alpha
Helix 17
AB8
B
135 148Right-handed alpha
Helix 18
AB9
B
166 188Right-handed alpha
Helix 19
AC1
B
203 210Right-handed alpha
Helix 20
AC2
B
218 223Right-handed alpha
Helix 21
AC3
C
2 18Right-handed alpha
Helix 22
AC4
C
20 24Right-handed 310
Helix 23
AC5
C
34 43Right-handed alpha
Helix 24
AC6
C
53 67Right-handed alpha
Helix 25
AC7
C
80 87Right-handed 310
Helix 26
AC8
C
99 113Right-handed alpha
Helix 27
AC9
C
135 148Right-handed alpha
Helix 28
AD1
C
166 188Right-handed alpha
Helix 29
AD2
C
203 210Right-handed alpha
Helix 30
AD3
C
218 223Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 7F8E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 29first strand
Strand 2
A
48 51parallel
Strand 3
A
72 75parallel
Strand 4
A
91 97parallel
Strand 5
A
117 122parallel
Strand 6
A
152 158parallel
Strand 7
A
195 197parallel
Strand 8
A
214 217parallel
Strand 9
A
25 29parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 29first strand
Strand 2
B
48 51parallel
Strand 3
B
72 75parallel
Strand 4
B
93 97parallel
Strand 5
B
117 122parallel
Strand 6
B
152 158parallel
Strand 7
B
195 197parallel
Strand 8
B
214 217parallel
Strand 9
B
25 29parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
25 29first strand
Strand 2
C
48 51parallel
Strand 3
C
72 75parallel
Strand 4
C
93 97parallel
Strand 5
C
117 122parallel
Strand 6
C
152 158parallel
Strand 7
C
195 197parallel
Strand 8
C
214 217parallel
Strand 9
C
25 29parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il