Analysis of interatomic Contacts of Structural Units in PDB entry:
7F8R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7F8R entry

There are 4 chains in PDB entry 7F8R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 5ASN 23
A
 PRO 25LYS 241
B
 GLU 4ASN 23
B
 PRO 25LYS 241
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 7F8R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 38Right-handed alpha
Helix 2
AA2
A
52 59Right-handed alpha
Helix 3
AA3
A
76 88Right-handed alpha
Helix 4
AA4
A
100 105Right-handed 310
Helix 5
AA5
A
109 120Right-handed alpha
Helix 6
AA6
A
125 146Right-handed alpha
Helix 7
AA7
A
148 152Right-handed 310
Helix 8
AA8
A
174 196Right-handed alpha
Helix 9
AA9
A
203 216Right-handed alpha
Helix 10
AB1
A
216 221Right-handed alpha
Helix 11
AB2
A
225 238Right-handed alpha
Helix 12
AB3
B
24 38Right-handed alpha
Helix 13
AB4
B
52 59Right-handed alpha
Helix 14
AB5
B
76 88Right-handed alpha
Helix 15
AB6
B
100 105Right-handed 310
Helix 16
AB7
B
109 120Right-handed alpha
Helix 17
AB8
B
122 124Right-handed 310
Helix 18
AB9
B
125 146Right-handed alpha
Helix 19
AC1
B
148 152Right-handed 310
Helix 20
AC2
B
174 195Right-handed alpha
Helix 21
AC3
B
203 215Right-handed alpha
Helix 22
AC4
B
216 221Right-handed alpha
Helix 23
AC5
B
225 238Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 7F8R. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 46first strand
Strand 2
A
8 13parallel
Strand 3
A
66 69anti-parallel
Strand 4
A
72 75anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 46first strand
Strand 2
B
8 13parallel
Strand 3
B
66 69anti-parallel
Strand 4
B
72 74anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il