Analysis of interatomic Contacts of Structural Units in PDB entry:
7F8S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7F8S entry

There are 4 chains in PDB entry 7F8S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 19
A
 PRO 21VAL 211
B
 HIS 0ASP 19
B
 PRO 21VAL 211
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 7F8S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 34Right-handed alpha
Helix 2
AA2
A
43 47Right-handed 310
Helix 3
AA3
A
48 55Right-handed alpha
Helix 4
AA4
A
73 85Right-handed alpha
Helix 5
AA5
A
93 97Right-handed 310
Helix 6
AA6
A
102 113Right-handed alpha
Helix 7
AA7
A
119 138Right-handed alpha
Helix 8
AA8
A
148 170Right-handed alpha
Helix 9
AA9
A
177 189Right-handed alpha
Helix 10
AB1
A
190 197Right-handed alpha
Helix 11
AB2
A
199 208Right-handed alpha
Helix 12
AB3
A
209 211Right-handed 310
Helix 13
AB4
B
20 33Right-handed alpha
Helix 14
AB5
B
43 47Right-handed 310
Helix 15
AB6
B
48 55Right-handed alpha
Helix 16
AB7
B
73 85Right-handed alpha
Helix 17
AB8
B
102 113Right-handed alpha
Helix 18
AB9
B
119 139Right-handed alpha
Helix 19
AC1
B
148 170Right-handed alpha
Helix 20
AC2
B
177 190Right-handed alpha
Helix 21
AC3
B
190 197Right-handed alpha
Helix 22
AC4
B
199 211Right-handed alpha
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There are 4 sheets in PDB entry 7F8S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 17first strand
Strand 2
A
3 10anti-parallel
Strand 3
A
37 42parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 17first strand
Strand 2
A
3 10anti-parallel
Strand 3
A
62 64anti-parallel
Strand 4
A
71 72anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 17first strand
Strand 2
B
4 10anti-parallel
Strand 3
B
38 42parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 17first strand
Strand 2
B
4 10anti-parallel
Strand 3
B
62 64anti-parallel
Strand 4
B
71 72anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il