Analysis of interatomic Contacts of Structural Units in PDB entry:
7F8W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7F8W entry

There are 6 chains in PDB entry 7F8W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 7	VAL 353
B	ASN 35	ASN 340
C	LYS 29	PHE 61
D	VAL 19	LEU 264
E	GLY 2	ASP 16
R	ALA 55	CYS 405

There are 21 helices in PDB entry 7F8W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	30	Right-handed alpha
Helix 2	AA2	A	45	57	Right-handed alpha
Helix 3	AA3	A	206	212	Right-handed alpha
Helix 4	AA4	A	242	254	Right-handed alpha
Helix 5	AA5	A	273	280	Right-handed alpha
Helix 6	AA6	A	297	310	Right-handed alpha
Helix 7	AA7	A	329	350	Right-handed alpha
Helix 8	AA8	C	30	44	Right-handed alpha
Helix 9	AA9	D	45	49	Right-handed 310
Helix 10	AB1	D	79	82	Right-handed 310
Helix 11	AB2	R	56	81	Right-handed alpha
Helix 12	AB3	R	87	117	Right-handed alpha
Helix 13	AB4	R	123	157	Right-handed alpha
Helix 14	AB5	R	158	166	Right-handed alpha
Helix 15	AB6	R	167	186	Right-handed alpha
Helix 16	AB7	R	211	226	Right-handed alpha
Helix 17	AB8	R	227	249	Right-handed alpha
Helix 18	AB9	R	327	359	Right-handed alpha
Helix 19	AC1	R	362	367	Right-handed alpha
Helix 20	AC2	R	369	391	Right-handed alpha
Helix 21	AC3	R	394	405	Right-handed alpha

There are 14 sheets in PDB entry 7F8W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	187	first strand
Strand 2	A	196	199	anti-parallel
Strand 3	A	36	39	parallel
Strand 4	A	220	223	parallel
Strand 5	A	265	266	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	52	first strand
Strand 2	B	335	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	105	first strand
Strand 2	B	111	114	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	176	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	191	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	234	first strand
Strand 2	B	240	244	anti-parallel
Strand 3	B	252	254	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	306	307	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	24	first strand
Strand 2	D	35	41	anti-parallel
Strand 3	D	95	100	anti-parallel
Strand 4	D	86	90	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	29	first strand
Strand 2	D	132	136	parallel
Strand 3	D	109	111	anti-parallel
Strand 4	D	55	56	anti-parallel
Strand 5	D	62	63	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	77	first strand
Strand 2	D	66	68	anti-parallel
Strand 3	D	50	52	anti-parallel
Strand 4	D	114	116	anti-parallel
Strand 5	D	127	128	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	159	first strand
Strand 2	D	172	177	anti-parallel
Strand 3	D	229	233	anti-parallel
Strand 4	D	220	224	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	163	165	first strand
Strand 2	D	261	263	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	211	212	first strand
Strand 2	D	202	207	anti-parallel
Strand 3	D	191	196	anti-parallel
Strand 4	D	243	248	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7F8W

Analysis of interatomic Contacts of Structural Units in PDB entry:
7F8W