Analysis of interatomic Contacts of Structural Units in PDB entry:
7F97

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7F97 entry

There are 3 chains in PDB entry 7F97 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 252	TYR 746
B	MET 252	TYR 746
C	MET 252	TYR 503

There are 70 helices in PDB entry 7F97. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	261	273	Right-handed alpha
Helix 2	AA2	A	288	309	Right-handed alpha
Helix 3	AA3	A	322	326	Right-handed alpha
Helix 4	AA4	A	330	336	Right-handed alpha
Helix 5	AA5	A	360	366	Right-handed alpha
Helix 6	AA6	A	367	372	Right-handed alpha
Helix 7	AA7	A	374	378	Right-handed 310
Helix 8	AA8	A	416	439	Right-handed alpha
Helix 9	AA9	A	484	491	Right-handed alpha
Helix 10	AB1	A	513	524	Right-handed alpha
Helix 11	AB2	A	532	536	Right-handed 310
Helix 12	AB3	A	551	568	Right-handed alpha
Helix 13	AB4	A	582	593	Right-handed alpha
Helix 14	AB5	A	602	607	Right-handed alpha
Helix 15	AB6	A	628	654	Right-handed alpha
Helix 16	AB7	A	661	663	Right-handed 310
Helix 17	AB8	A	664	671	Right-handed alpha
Helix 18	AB9	A	683	696	Right-handed alpha
Helix 19	AC1	B	261	273	Right-handed alpha
Helix 20	AC2	B	288	308	Right-handed alpha
Helix 21	AC3	B	360	365	Right-handed alpha
Helix 22	AC4	B	367	372	Right-handed alpha
Helix 23	AC5	B	374	378	Right-handed 310
Helix 24	AC6	B	416	438	Right-handed alpha
Helix 25	AC7	B	484	491	Right-handed alpha
Helix 26	AC8	B	513	524	Right-handed alpha
Helix 27	AC9	B	532	536	Right-handed 310
Helix 28	AD1	B	551	569	Right-handed alpha
Helix 29	AD2	B	582	593	Right-handed alpha
Helix 30	AD3	B	602	609	Right-handed alpha
Helix 31	AD4	B	628	654	Right-handed alpha
Helix 32	AD5	B	661	663	Right-handed 310
Helix 33	AD6	B	664	671	Right-handed alpha
Helix 34	AD7	B	683	698	Right-handed alpha
Helix 35	AD8	C	261	273	Right-handed alpha
Helix 36	AD9	C	288	309	Right-handed alpha
Helix 37	AE1	C	322	327	Right-handed alpha
Helix 38	AE2	C	335	338	Right-handed 310
Helix 39	AE3	C	360	366	Right-handed alpha
Helix 40	AE4	C	367	372	Right-handed alpha
Helix 41	AE5	C	374	378	Right-handed 310
Helix 42	AE6	C	416	439	Right-handed alpha
Helix 43	AE7	C	484	491	Right-handed alpha
Helix 44	AE8	C	513	524	Right-handed alpha
Helix 45	AE9	C	532	536	Right-handed 310
Helix 46	AF1	C	551	568	Right-handed alpha
Helix 47	AF2	C	582	593	Right-handed alpha
Helix 48	AF3	C	602	608	Right-handed alpha
Helix 49	AF4	C	628	655	Right-handed alpha
Helix 50	AF5	C	661	663	Right-handed 310
Helix 51	AF6	C	664	671	Right-handed alpha
Helix 52	AF7	C	682	697	Right-handed alpha
Helix 53	AF8	D	261	273	Right-handed alpha
Helix 54	AF9	D	288	309	Right-handed alpha
Helix 55	AG1	D	321	327	Right-handed alpha
Helix 56	AG2	D	360	366	Right-handed alpha
Helix 57	AG3	D	367	372	Right-handed alpha
Helix 58	AG4	D	374	378	Right-handed 310
Helix 59	AG5	D	416	438	Right-handed alpha
Helix 60	AG6	D	484	490	Right-handed alpha
Helix 61	AG7	D	513	524	Right-handed alpha
Helix 62	AG8	D	532	536	Right-handed 310
Helix 63	AG9	D	554	569	Right-handed alpha
Helix 64	AH1	D	582	593	Right-handed alpha
Helix 65	AH2	D	602	608	Right-handed alpha
Helix 66	AH3	D	625	627	Right-handed 310
Helix 67	AH4	D	628	654	Right-handed alpha
Helix 68	AH5	D	661	663	Right-handed 310
Helix 69	AH6	D	664	671	Right-handed alpha
Helix 70	AH7	D	683	695	Right-handed alpha

There are 19 sheets in PDB entry 7F97. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	278	first strand
Strand 2	A	285	287	anti-parallel

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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	313	first strand
Strand 2	A	380	389	parallel
Strand 3	A	404	414	anti-parallel
Strand 4	A	505	512	anti-parallel
Strand 5	A	472	483	anti-parallel
Strand 6	A	459	467	anti-parallel
Strand 7	A	444	447	anti-parallel
Strand 8	A	712	717	anti-parallel
Strand 9	A	738	743	anti-parallel
Strand 10	A	674	679	anti-parallel
Strand 11	A	656	658	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	319	321	first strand
Strand 2	A	349	356	anti-parallel
Strand 3	A	340	345	anti-parallel
Strand 4	B	340	345	anti-parallel
Strand 5	B	348	356	anti-parallel
Strand 6	B	319	321	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	493	495	first strand
Strand 2	A	501	503	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	573	575	first strand
Strand 2	A	540	544	parallel
Strand 3	A	597	601	parallel
Strand 4	A	610	615	anti-parallel
Strand 5	A	621	625	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	278	first strand
Strand 2	B	285	287	anti-parallel

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There are 11 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	314	first strand
Strand 2	B	380	389	parallel
Strand 3	B	404	414	anti-parallel
Strand 4	B	505	512	anti-parallel
Strand 5	B	472	483	anti-parallel
Strand 6	B	459	467	anti-parallel
Strand 7	B	444	447	anti-parallel
Strand 8	B	712	717	anti-parallel
Strand 9	B	738	743	anti-parallel
Strand 10	B	674	679	anti-parallel
Strand 11	B	656	658	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	493	495	first strand
Strand 2	B	501	503	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	573	575	first strand
Strand 2	B	540	544	parallel
Strand 3	B	597	601	parallel
Strand 4	B	610	615	anti-parallel
Strand 5	B	621	625	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	276	278	first strand
Strand 2	C	285	287	anti-parallel

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There are 11 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	314	first strand
Strand 2	C	380	389	parallel
Strand 3	C	404	414	anti-parallel
Strand 4	C	505	512	anti-parallel
Strand 5	C	472	483	anti-parallel
Strand 6	C	459	467	anti-parallel
Strand 7	C	444	447	anti-parallel
Strand 8	C	712	717	anti-parallel
Strand 9	C	738	745	anti-parallel
Strand 10	C	674	679	anti-parallel
Strand 11	C	656	658	parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	314	first strand
Strand 2	C	380	389	parallel
Strand 3	C	404	414	anti-parallel
Strand 4	C	505	512	anti-parallel
Strand 5	C	472	483	anti-parallel
Strand 6	C	738	745	parallel
Strand 7	C	674	679	anti-parallel
Strand 8	C	656	658	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	319	321	first strand
Strand 2	C	349	356	anti-parallel
Strand 3	C	340	345	anti-parallel
Strand 4	D	340	345	anti-parallel
Strand 5	D	349	356	anti-parallel
Strand 6	D	319	320	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	493	495	first strand
Strand 2	C	501	503	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	573	575	first strand
Strand 2	C	540	544	parallel
Strand 3	C	597	601	parallel
Strand 4	C	610	615	anti-parallel
Strand 5	C	621	625	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	276	278	first strand
Strand 2	D	285	287	anti-parallel

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There are 11 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	312	313	first strand
Strand 2	D	380	389	parallel
Strand 3	D	404	414	anti-parallel
Strand 4	D	505	512	anti-parallel
Strand 5	D	472	483	anti-parallel
Strand 6	D	459	467	anti-parallel
Strand 7	D	444	447	anti-parallel
Strand 8	D	712	717	anti-parallel
Strand 9	D	738	743	anti-parallel
Strand 10	D	674	679	anti-parallel
Strand 11	D	656	658	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	493	495	first strand
Strand 2	D	501	503	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	573	575	first strand
Strand 2	D	540	544	parallel
Strand 3	D	597	601	parallel
Strand 4	D	612	615	anti-parallel
Strand 5	D	621	623	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7F97

Analysis of interatomic Contacts of Structural Units in PDB entry:
7F97