Analysis of interatomic Contacts of Structural Units in PDB entry:
7F9M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7F9M entry

There are 4 chains in PDB entry 7F9M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 166SER 323
B
 VAL 166SER 323
C
 ASP 25ALA 123
D
 ASP 25ALA 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 7F9M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
168 206Right-handed alpha
Helix 2
AA2
A
207 212Right-handed alpha
Helix 3
AA3
A
215 221Right-handed alpha
Helix 4
AA4
A
222 223Right-handed 310
Helix 5
AA5
A
224 230Right-handed 310
Helix 6
AA6
A
231 243Right-handed alpha
Helix 7
AA7
A
251 262Right-handed alpha
Helix 8
AA8
A
277 323Right-handed alpha
Helix 9
AA9
B
168 206Right-handed alpha
Helix 10
AB1
B
207 211Right-handed 310
Helix 11
AB2
B
215 221Right-handed alpha
Helix 12
AB3
B
224 230Right-handed 310
Helix 13
AB4
B
231 243Right-handed alpha
Helix 14
AB5
B
251 262Right-handed alpha
Helix 15
AB6
B
274 323Right-handed alpha
Helix 16
AB7
C
92 96Right-handed 310
Helix 17
AB8
D
92 96Right-handed 310
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There are 6 sheets in PDB entry 7F9M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
30 34first strand
Strand 2
C
45 51anti-parallel
Strand 3
C
81 88anti-parallel
Strand 4
C
75 78anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 40first strand
Strand 2
C
116 121parallel
Strand 3
C
97 105anti-parallel
Strand 4
C
57 62anti-parallel
Strand 5
C
67 71anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 40first strand
Strand 2
C
116 121parallel
Strand 3
C
97 105anti-parallel
Strand 4
C
108 109anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
30 34first strand
Strand 2
D
45 51anti-parallel
Strand 3
D
81 88anti-parallel
Strand 4
D
75 78anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
68 71first strand
Strand 2
D
57 61anti-parallel
Strand 3
D
97 105anti-parallel
Strand 4
D
108 109anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
68 71first strand
Strand 2
D
57 61anti-parallel
Strand 3
D
97 105anti-parallel
Strand 4
D
116 118anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il