Analysis of interatomic Contacts of Structural Units in PDB entry:
7F9P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7F9P entry

There is 1 chain in PDB entry 7F9P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 333TYR 830
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 7F9P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
341 353Right-handed alpha
Helix 2
AA2
A
368 389Right-handed alpha
Helix 3
AA3
A
402 406Right-handed alpha
Helix 4
AA4
A
440 452Right-handed alpha
Helix 5
AA5
A
454 458Right-handed 310
Helix 6
AA6
A
496 517Right-handed alpha
Helix 7
AA7
A
564 571Right-handed alpha
Helix 8
AA8
A
593 604Right-handed alpha
Helix 9
AA9
A
631 648Right-handed alpha
Helix 10
AB1
A
662 673Right-handed alpha
Helix 11
AB2
A
682 689Right-handed alpha
Helix 12
AB3
A
706 735Right-handed alpha
Helix 13
AB4
A
741 743Right-handed 310
Helix 14
AB5
A
744 751Right-handed alpha
Helix 15
AB6
A
762 785Right-handed alpha
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There are 5 sheets in PDB entry 7F9P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 357first strand
Strand 2
A
366 367anti-parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 393first strand
Strand 2
A
460 469parallel
Strand 3
A
484 494anti-parallel
Strand 4
A
585 592anti-parallel
Strand 5
A
552 563anti-parallel
Strand 6
A
539 547anti-parallel
Strand 7
A
524 527anti-parallel
Strand 8
A
796 801anti-parallel
Strand 9
A
822 827anti-parallel
Strand 10
A
754 759anti-parallel
Strand 11
A
736 738parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
399 401first strand
Strand 2
A
428 436anti-parallel
Strand 3
A
421 425anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
573 575first strand
Strand 2
A
581 583anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
653 655first strand
Strand 2
A
620 624parallel
Strand 3
A
677 681parallel
Strand 4
A
690 695anti-parallel
Strand 5
A
701 705anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il