Analysis of interatomic Contacts of Structural Units in PDB entry:
7F9U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7F9U entry

There are 3 chains in PDB entry 7F9U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 333	TYR 830
B	ALA 332	TYR 830
C	ALA 332	LYS 607

There are 62 helices in PDB entry 7F9U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	341	353	Right-handed alpha
Helix 2	AA2	A	368	388	Right-handed alpha
Helix 3	AA3	A	440	452	Right-handed alpha
Helix 4	AA4	A	454	458	Right-handed 310
Helix 5	AA5	A	496	518	Right-handed alpha
Helix 6	AA6	A	548	551	Right-handed 310
Helix 7	AA7	A	564	571	Right-handed alpha
Helix 8	AA8	A	593	604	Right-handed alpha
Helix 9	AA9	A	612	616	Right-handed 310
Helix 10	AB1	A	631	649	Right-handed alpha
Helix 11	AB2	A	662	674	Right-handed alpha
Helix 12	AB3	A	708	735	Right-handed alpha
Helix 13	AB4	A	741	743	Right-handed 310
Helix 14	AB5	A	744	751	Right-handed alpha
Helix 15	AB6	A	762	779	Right-handed alpha
Helix 16	AB7	B	341	353	Right-handed alpha
Helix 17	AB8	B	368	389	Right-handed alpha
Helix 18	AB9	B	402	406	Right-handed alpha
Helix 19	AC1	B	440	452	Right-handed alpha
Helix 20	AC2	B	454	458	Right-handed 310
Helix 21	AC3	B	496	518	Right-handed alpha
Helix 22	AC4	B	548	551	Right-handed 310
Helix 23	AC5	B	564	571	Right-handed alpha
Helix 24	AC6	B	593	604	Right-handed alpha
Helix 25	AC7	B	612	616	Right-handed 310
Helix 26	AC8	B	631	648	Right-handed alpha
Helix 27	AC9	B	662	674	Right-handed alpha
Helix 28	AD1	B	682	689	Right-handed alpha
Helix 29	AD2	B	708	735	Right-handed alpha
Helix 30	AD3	B	741	743	Right-handed 310
Helix 31	AD4	B	744	751	Right-handed alpha
Helix 32	AD5	B	762	784	Right-handed alpha
Helix 33	AD6	C	341	353	Right-handed alpha
Helix 34	AD7	C	368	389	Right-handed alpha
Helix 35	AD8	C	402	406	Right-handed alpha
Helix 36	AD9	C	440	452	Right-handed alpha
Helix 37	AE1	C	454	458	Right-handed 310
Helix 38	AE2	C	496	518	Right-handed alpha
Helix 39	AE3	C	564	571	Right-handed alpha
Helix 40	AE4	C	593	604	Right-handed alpha
Helix 41	AE5	C	612	616	Right-handed 310
Helix 42	AE6	C	633	649	Right-handed alpha
Helix 43	AE7	C	662	674	Right-handed alpha
Helix 44	AE8	C	682	687	Right-handed alpha
Helix 45	AE9	C	708	735	Right-handed alpha
Helix 46	AF1	C	741	743	Right-handed 310
Helix 47	AF2	C	744	751	Right-handed alpha
Helix 48	AF3	C	762	784	Right-handed alpha
Helix 49	AF4	D	341	353	Right-handed alpha
Helix 50	AF5	D	368	389	Right-handed alpha
Helix 51	AF6	D	402	406	Right-handed alpha
Helix 52	AF7	D	440	452	Right-handed alpha
Helix 53	AF8	D	454	458	Right-handed 310
Helix 54	AF9	D	496	517	Right-handed alpha
Helix 55	AG1	D	564	571	Right-handed alpha
Helix 56	AG2	D	593	604	Right-handed alpha
Helix 57	AG3	D	635	648	Right-handed alpha
Helix 58	AG4	D	662	674	Right-handed alpha
Helix 59	AG5	D	682	689	Right-handed alpha
Helix 60	AG6	D	708	735	Right-handed alpha
Helix 61	AG7	D	744	751	Right-handed alpha
Helix 62	AG8	D	762	783	Right-handed alpha

There are 19 sheets in PDB entry 7F9U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	356	357	first strand
Strand 2	A	366	367	anti-parallel

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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	392	393	first strand
Strand 2	A	460	469	parallel
Strand 3	A	484	494	anti-parallel
Strand 4	A	585	592	anti-parallel
Strand 5	A	552	563	anti-parallel
Strand 6	A	539	547	anti-parallel
Strand 7	A	524	527	anti-parallel
Strand 8	A	796	801	anti-parallel
Strand 9	A	822	827	anti-parallel
Strand 10	A	754	759	anti-parallel
Strand 11	A	736	738	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	401	first strand
Strand 2	A	428	436	anti-parallel
Strand 3	A	420	425	anti-parallel
Strand 4	D	420	425	anti-parallel
Strand 5	D	428	436	anti-parallel
Strand 6	D	399	401	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	573	575	first strand
Strand 2	A	581	583	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	653	655	first strand
Strand 2	A	620	624	parallel
Strand 3	A	677	681	parallel
Strand 4	A	690	695	anti-parallel
Strand 5	A	701	705	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	356	358	first strand
Strand 2	B	365	367	anti-parallel

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There are 11 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	392	393	first strand
Strand 2	B	460	469	parallel
Strand 3	B	484	494	anti-parallel
Strand 4	B	585	592	anti-parallel
Strand 5	B	553	563	anti-parallel
Strand 6	B	539	546	anti-parallel
Strand 7	B	524	527	anti-parallel
Strand 8	B	796	801	anti-parallel
Strand 9	B	822	827	anti-parallel
Strand 10	B	754	759	anti-parallel
Strand 11	B	736	738	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	399	401	first strand
Strand 2	B	428	436	anti-parallel
Strand 3	B	420	425	anti-parallel
Strand 4	C	420	425	anti-parallel
Strand 5	C	428	436	anti-parallel
Strand 6	C	399	401	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	573	575	first strand
Strand 2	B	581	583	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	653	655	first strand
Strand 2	B	620	624	parallel
Strand 3	B	677	681	parallel
Strand 4	B	690	695	anti-parallel
Strand 5	B	701	705	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	356	357	first strand
Strand 2	C	366	367	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	392	393	first strand
Strand 2	C	460	469	parallel
Strand 3	C	484	494	anti-parallel
Strand 4	C	585	592	anti-parallel
Strand 5	C	552	563	anti-parallel
Strand 6	C	539	547	anti-parallel
Strand 7	C	524	527	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	573	575	first strand
Strand 2	C	581	583	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	653	655	first strand
Strand 2	C	620	624	parallel
Strand 3	C	677	681	parallel
Strand 4	C	690	695	anti-parallel
Strand 5	C	701	705	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	736	738	first strand
Strand 2	C	754	759	parallel
Strand 3	C	822	827	anti-parallel
Strand 4	C	796	799	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	356	357	first strand
Strand 2	D	366	367	anti-parallel

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There are 11 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	392	393	first strand
Strand 2	D	460	469	parallel
Strand 3	D	484	494	anti-parallel
Strand 4	D	585	592	anti-parallel
Strand 5	D	553	563	anti-parallel
Strand 6	D	539	546	anti-parallel
Strand 7	D	524	527	anti-parallel
Strand 8	D	795	801	anti-parallel
Strand 9	D	822	828	anti-parallel
Strand 10	D	754	759	anti-parallel
Strand 11	D	736	738	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	573	575	first strand
Strand 2	D	581	583	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	653	655	first strand
Strand 2	D	620	624	parallel
Strand 3	D	677	681	parallel
Strand 4	D	690	695	anti-parallel
Strand 5	D	701	705	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7F9U

Analysis of interatomic Contacts of Structural Units in PDB entry:
7F9U