Analysis of interatomic Contacts of Structural Units in PDB entry:
7FBD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7FBD entry

There are 2 chains in PDB entry 7FBD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LYS 2	PHE 445
A	LYS 2	HIS 451

There are 46 helices in PDB entry 7FBD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	17	32	Right-handed alpha
Helix 2	AA2	B	43	52	Right-handed alpha
Helix 3	AA3	B	53	55	Right-handed 310
Helix 4	AA4	B	67	74	Right-handed alpha
Helix 5	AA5	B	83	88	Right-handed alpha
Helix 6	AA6	B	91	98	Right-handed alpha
Helix 7	AA7	B	129	131	Right-handed 310
Helix 8	AA8	B	132	143	Right-handed alpha
Helix 9	AA9	B	154	165	Right-handed alpha
Helix 10	AB1	B	186	202	Right-handed alpha
Helix 11	AB2	B	210	221	Right-handed alpha
Helix 12	AB3	B	229	239	Right-handed alpha
Helix 13	AB4	B	273	284	Right-handed alpha
Helix 14	AB5	B	287	298	Right-handed alpha
Helix 15	AB6	B	305	313	Right-handed alpha
Helix 16	AB7	B	315	328	Right-handed alpha
Helix 17	AB8	B	335	353	Right-handed alpha
Helix 18	AB9	B	357	368	Right-handed alpha
Helix 19	AC1	B	372	386	Right-handed alpha
Helix 20	AC2	B	388	403	Right-handed alpha
Helix 21	AC3	B	406	415	Right-handed alpha
Helix 22	AC4	B	418	432	Right-handed alpha
Helix 23	AC5	B	434	445	Right-handed alpha
Helix 24	AC6	A	17	33	Right-handed alpha
Helix 25	AC7	A	43	54	Right-handed alpha
Helix 26	AC8	A	66	74	Right-handed alpha
Helix 27	AC9	A	83	88	Right-handed alpha
Helix 28	AD1	A	91	98	Right-handed alpha
Helix 29	AD2	A	129	131	Right-handed 310
Helix 30	AD3	A	132	143	Right-handed alpha
Helix 31	AD4	A	154	165	Right-handed alpha
Helix 32	AD5	A	186	202	Right-handed alpha
Helix 33	AD6	A	210	220	Right-handed alpha
Helix 34	AD7	A	229	231	Right-handed 310
Helix 35	AD8	A	232	239	Right-handed alpha
Helix 36	AD9	A	273	284	Right-handed alpha
Helix 37	AE1	A	287	298	Right-handed alpha
Helix 38	AE2	A	305	313	Right-handed alpha
Helix 39	AE3	A	315	328	Right-handed alpha
Helix 40	AE4	A	336	353	Right-handed alpha
Helix 41	AE5	A	357	371	Right-handed alpha
Helix 42	AE6	A	376	385	Right-handed alpha
Helix 43	AE7	A	388	402	Right-handed alpha
Helix 44	AE8	A	406	415	Right-handed alpha
Helix 45	AE9	A	418	433	Right-handed alpha
Helix 46	AF1	A	434	445	Right-handed alpha

There are 12 sheets in PDB entry 7FBD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	39	first strand
Strand 2	B	7	11	parallel
Strand 3	B	60	64	parallel
Strand 4	B	259	267	anti-parallel
Strand 5	B	106	112	anti-parallel
Strand 6	B	302	303	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	39	first strand
Strand 2	B	7	11	parallel
Strand 3	B	60	64	parallel
Strand 4	B	259	267	anti-parallel
Strand 5	B	329	330	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	100	first strand
Strand 2	B	103	104	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	148	first strand
Strand 2	B	223	228	parallel
Strand 3	B	115	119	anti-parallel
Strand 4	B	243	246	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	173	first strand
Strand 2	B	176	183	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	251	first strand
Strand 2	B	254	255	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	39	first strand
Strand 2	A	8	11	parallel
Strand 3	A	60	64	parallel
Strand 4	A	259	267	anti-parallel
Strand 5	A	106	112	anti-parallel
Strand 6	A	302	303	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	39	first strand
Strand 2	A	8	11	parallel
Strand 3	A	60	64	parallel
Strand 4	A	259	267	anti-parallel
Strand 5	A	329	330	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	100	first strand
Strand 2	A	103	104	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	228	first strand
Strand 2	A	115	119	anti-parallel
Strand 3	A	243	246	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	173	first strand
Strand 2	A	176	183	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	251	first strand
Strand 2	A	254	255	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7FBD

Analysis of interatomic Contacts of Structural Units in PDB entry:
7FBD