Analysis of interatomic Contacts of Structural Units in PDB entry:
7FBP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7FBP entry

There are 2 chains in PDB entry 7FBP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 373THR 613
B
 ASP 1TYR 34
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 6 helices in PDB entry 7FBP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
410 415Right-handed 310
Helix 2
AA2
A
419 422Right-handed 310
Helix 3
AA3
A
528 533Right-handed alpha
Helix 4
AA4
A
538 542Right-handed 310
Helix 5
AA5
A
605 612Right-handed alpha
Helix 6
AA6
B
14 18Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 7FBP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 378first strand
Strand 2
A
520 524anti-parallel
Strand 3
A
498 504anti-parallel
Strand 4
A
566 571anti-parallel
Strand 5
A
579 587anti-parallel
Strand 6
A
597 601anti-parallel
Strand 7
A
546 549anti-parallel
Strand 8
A
526 527anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 378first strand
Strand 2
A
520 524anti-parallel
Strand 3
A
498 504anti-parallel
Strand 4
A
566 571anti-parallel
Strand 5
A
579 587anti-parallel
Strand 6
B
5 6anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 10first strand
Strand 2
A
395 403anti-parallel
Strand 3
A
406 409anti-parallel
Strand 4
A
463 467anti-parallel
Strand 5
A
440 449anti-parallel
Strand 6
A
424 427anti-parallel
Strand 7
A
387 392anti-parallel
Strand 8
A
395 403anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 24first strand
Strand 2
B
30 31anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il