Analysis of interatomic Contacts of Structural Units in PDB entry:
7FD4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7FD4 entry

There are 7 chains in PDB entry 7FD4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
ARG 2VAL 780
C
ARG 2VAL 780
D
ARG 2VAL 780
E
ARG 2VAL 780
F
ARG 2VAL 780
A
ARG 2VAL 780
S
UNK 1UNK 22
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are170 helices in PDB entry 7FD4. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
B
30 39Right-handed alpha
Helix 2
AA2
B
117 139Right-handed alpha
Helix 3
AA3
B
148 153Right-handed alpha
Helix 4
AA4
B
157 168Right-handed alpha
Helix 5
AA5
B
172 181Right-handed alpha
Helix 6
AA6
B
185 238Right-handed alpha
Helix 7
AA7
B
243 254Right-handed alpha
Helix 8
AA8
B
259 274Right-handed alpha
Helix 9
AA9
B
282 296Right-handed alpha
Helix 10
AB1
B
307 316Right-handed alpha
Helix 11
AB2
B
322 339Right-handed alpha
Helix 12
AB3
B
363 372Right-handed alpha
Helix 13
AB4
B
386 390Right-handed 310
Helix 14
AB5
B
403 412Right-handed alpha
Helix 15
AB6
B
423 427Right-handed 310
Helix 16
AB7
B
478 485Right-handed alpha
Helix 17
AB8
B
494 505Right-handed alpha
Helix 18
AB9
B
505 513Right-handed alpha
Helix 19
AC1
B
523 534Right-handed alpha
Helix 20
AC2
B
540 561Right-handed alpha
Helix 21
AC3
B
573 579Right-handed alpha
Helix 22
AC4
B
630 647Right-handed alpha
Helix 23
AC5
B
679 693Right-handed alpha
Helix 24
AC6
B
717 728Right-handed alpha
Helix 25
AC7
B
738 746Right-handed 310
Helix 26
AC8
B
747 752Right-handed alpha
Helix 27
AC9
B
761 770Right-handed alpha
Helix 28
AD1
C
27 39Right-handed alpha
Helix 29
AD2
C
117 134Right-handed alpha
Helix 30
AD3
C
135 143Right-handed 310
Helix 31
AD4
C
147 154Right-handed alpha
Helix 32
AD5
C
157 168Right-handed alpha
Helix 33
AD6
C
172 182Right-handed alpha
Helix 34
AD7
C
184 238Right-handed alpha
Helix 35
AD8
C
243 256Right-handed alpha
Helix 36
AD9
C
259 274Right-handed alpha
Helix 37
AE1
C
284 296Right-handed alpha
Helix 38
AE2
C
307 316Right-handed alpha
Helix 39
AE3
C
322 339Right-handed alpha
Helix 40
AE4
C
361 372Right-handed alpha
Helix 41
AE5
C
386 390Right-handed 310
Helix 42
AE6
C
403 412Right-handed alpha
Helix 43
AE7
C
423 427Right-handed 310
Helix 44
AE8
C
438 443Right-handed alpha
Helix 45
AE9
C
478 483Right-handed alpha
Helix 46
AF1
C
494 505Right-handed alpha
Helix 47
AF2
C
505 514Right-handed alpha
Helix 48
AF3
C
523 534Right-handed alpha
Helix 49
AF4
C
540 561Right-handed alpha
Helix 50
AF5
C
570 572Right-handed 310
Helix 51
AF6
C
573 579Right-handed alpha
Helix 52
AF7
C
630 647Right-handed alpha
Helix 53
AF8
C
656 660Right-handed alpha
Helix 54
AF9
C
679 692Right-handed alpha
Helix 55
AG1
C
717 728Right-handed alpha
Helix 56
AG2
C
738 746Right-handed 310
Helix 57
AG3
C
747 754Right-handed alpha
Helix 58
AG4
C
761 770Right-handed alpha
Helix 59
AG5
D
27 40Right-handed alpha
Helix 60
AG6
D
117 139Right-handed alpha
Helix 61
AG7
D
157 168Right-handed alpha
Helix 62
AG8
D
172 182Right-handed alpha
Helix 63
AG9
D
184 238Right-handed alpha
Helix 64
AH1
D
244 256Right-handed alpha
Helix 65
AH2
D
259 276Right-handed alpha
Helix 66
AH3
D
280 295Right-handed alpha
Helix 67
AH4
D
307 316Right-handed alpha
Helix 68
AH5
D
322 339Right-handed alpha
Helix 69
AH6
D
361 372Right-handed alpha
Helix 70
AH7
D
386 390Right-handed 310
Helix 71
AH8
D
403 412Right-handed alpha
Helix 72
AH9
D
423 427Right-handed 310
Helix 73
AI1
D
434 440Right-handed alpha
Helix 74
AI2
D
478 483Right-handed alpha
Helix 75
AI3
D
494 505Right-handed alpha
Helix 76
AI4
D
505 514Right-handed alpha
Helix 77
AI5
D
523 535Right-handed alpha
Helix 78
AI6
D
540 561Right-handed alpha
Helix 79
AI7
D
573 578Right-handed alpha
Helix 80
AI8
D
630 646Right-handed alpha
Helix 81
AI9
D
656 660Right-handed alpha
Helix 82
AJ1
D
679 693Right-handed alpha
Helix 83
AJ2
D
717 729Right-handed alpha
Helix 84
AJ3
D
738 745Right-handed 310
Helix 85
AJ4
D
747 752Right-handed alpha
Helix 86
AJ5
D
761 770Right-handed alpha
Helix 87
AJ6
E
30 39Right-handed alpha
Helix 88
AJ7
E
117 139Right-handed alpha
Helix 89
AJ8
E
140 142Right-handed 310
Helix 90
AJ9
E
157 167Right-handed alpha
Helix 91
AK1
E
172 181Right-handed alpha
Helix 92
AK2
E
185 238Right-handed alpha
Helix 93
AK3
E
247 254Right-handed alpha
Helix 94
AK4
E
259 271Right-handed alpha
Helix 95
AK5
E
282 296Right-handed alpha
Helix 96
AK6
E
307 319Right-handed alpha
Helix 97
AK7
E
322 339Right-handed alpha
Helix 98
AK8
E
362 372Right-handed alpha
Helix 99
AK9
E
403 412Right-handed alpha
Helix 100
AL1
E
436 444Right-handed alpha
Helix 101
AL2
E
446 451Right-handed 310
Helix 102
AL3
E
478 485Right-handed alpha
Helix 103
AL4
E
494 505Right-handed alpha
Helix 104
AL5
E
505 515Right-handed alpha
Helix 105
AL6
E
523 535Right-handed alpha
Helix 106
AL7
E
540 561Right-handed alpha
Helix 107
AL8
E
573 579Right-handed alpha
Helix 108
AL9
E
630 646Right-handed alpha
Helix 109
AM1
E
647 652Right-handed alpha
Helix 110
AM2
E
679 693Right-handed alpha
Helix 111
AM3
E
717 728Right-handed alpha
Helix 112
AM4
E
738 746Right-handed 310
Helix 113
AM5
E
747 754Right-handed alpha
Helix 114
AM6
E
761 770Right-handed alpha
Helix 115
AM7
F
27 39Right-handed alpha
Helix 116
AM8
F
118 139Right-handed alpha
Helix 117
AM9
F
146 151Right-handed alpha
Helix 118
AN1
F
157 169Right-handed alpha
Helix 119
AN2
F
172 181Right-handed alpha
Helix 120
AN3
F
184 238Right-handed alpha
Helix 121
AN4
F
245 254Right-handed alpha
Helix 122
AN5
F
259 267Right-handed alpha
Helix 123
AN6
F
283 296Right-handed alpha
Helix 124
AN7
F
307 316Right-handed alpha
Helix 125
AN8
F
322 339Right-handed alpha
Helix 126
AN9
F
361 372Right-handed alpha
Helix 127
AO1
F
386 390Right-handed 310
Helix 128
AO2
F
403 412Right-handed alpha
Helix 129
AO3
F
423 427Right-handed 310
Helix 130
AO4
F
435 444Right-handed alpha
Helix 131
AO5
F
447 451Right-handed 310
Helix 132
AO6
F
494 513Right-handed alpha
Helix 133
AO7
F
524 535Right-handed alpha
Helix 134
AO8
F
540 559Right-handed alpha
Helix 135
AO9
F
573 579Right-handed alpha
Helix 136
AP1
F
630 647Right-handed alpha
Helix 137
AP2
F
679 693Right-handed alpha
Helix 138
AP3
F
717 727Right-handed alpha
Helix 139
AP4
F
738 745Right-handed 310
Helix 140
AP5
F
747 752Right-handed alpha
Helix 141
AP6
F
761 770Right-handed alpha
Helix 142
AP7
A
30 39Right-handed alpha
Helix 143
AP8
A
117 136Right-handed alpha
Helix 144
AP9
A
137 140Right-handed 310
Helix 145
AQ1
A
145 149Right-handed 310
Helix 146
AQ2
A
157 168Right-handed alpha
Helix 147
AQ3
A
172 182Right-handed alpha
Helix 148
AQ4
A
184 237Right-handed alpha
Helix 149
AQ5
A
243 256Right-handed alpha
Helix 150
AQ6
A
259 271Right-handed alpha
Helix 151
AQ7
A
282 294Right-handed alpha
Helix 152
AQ8
A
309 319Right-handed alpha
Helix 153
AQ9
A
322 339Right-handed alpha
Helix 154
AR1
A
362 372Right-handed alpha
Helix 155
AR2
A
403 412Right-handed alpha
Helix 156
AR3
A
423 427Right-handed 310
Helix 157
AR4
A
434 443Right-handed alpha
Helix 158
AR5
A
447 451Right-handed 310
Helix 159
AR6
A
473 477Right-handed 310
Helix 160
AR7
A
478 483Right-handed alpha
Helix 161
AR8
A
494 514Right-handed alpha
Helix 162
AR9
A
523 535Right-handed alpha
Helix 163
AS1
A
540 561Right-handed alpha
Helix 164
AS2
A
573 579Right-handed alpha
Helix 165
AS3
A
630 647Right-handed alpha
Helix 166
AS4
A
679 693Right-handed alpha
Helix 167
AS5
A
717 728Right-handed alpha
Helix 168
AS6
A
738 746Right-handed 310
Helix 169
AS7
A
747 752Right-handed alpha
Helix 170
AS8
A
761 770Right-handed alpha
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There are 45 sheets in PDB entry 7FD4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
20 25first strand
Strand 2
B
82 87anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
43 46first strand
Strand 2
B
67 70anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
376 380first strand
Strand 2
B
418 422parallel
Strand 3
B
466 471parallel
Strand 4
B
350 354parallel
Strand 5
B
486 489parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
451 452first strand
Strand 2
B
459 460anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
520 522first strand
Strand 2
B
567 569parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
596 602first strand
Strand 2
B
607 618anti-parallel
Strand 3
B
661 666anti-parallel
Strand 4
B
622 626parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
701 702first strand
Strand 2
B
733 736parallel
Strand 3
B
756 759parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
705 706first strand
Strand 2
B
712 713anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
5 6first strand
Strand 2
C
104 105anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
65 69first strand
Strand 2
C
88 93anti-parallel
Strand 3
C
110 111anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
74 76first strand
Strand 2
C
82 84anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
376 380first strand
Strand 2
C
418 422parallel
Strand 3
C
466 471parallel
Strand 4
C
350 354parallel
Strand 5
C
486 489parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
451 452first strand
Strand 2
C
459 460anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
521 522first strand
Strand 2
C
568 569parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
596 603first strand
Strand 2
C
606 618anti-parallel
Strand 3
C
661 666anti-parallel
Strand 4
C
622 626parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
700 702first strand
Strand 2
C
732 736parallel
Strand 3
C
756 759parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
705 706first strand
Strand 2
C
712 713anti-parallel
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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
6 7first strand
Strand 2
D
103 106anti-parallel
Strand 3
D
96 98anti-parallel
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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
43 46first strand
Strand 2
D
65 76anti-parallel
Strand 3
D
82 93anti-parallel
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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
376 380first strand
Strand 2
D
418 422parallel
Strand 3
D
466 471parallel
Strand 4
D
350 354parallel
Strand 5
D
486 489parallel
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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
451 452first strand
Strand 2
D
459 460anti-parallel
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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
521 522first strand
Strand 2
D
568 569parallel
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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
622 626first strand
Strand 2
D
661 666parallel
Strand 3
D
606 618anti-parallel
Strand 4
D
596 603anti-parallel
Strand 5
D
701 702parallel
Strand 6
D
732 736parallel
Strand 7
D
755 759parallel
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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
705 706first strand
Strand 2
D
712 713anti-parallel
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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
5 6first strand
Strand 2
E
104 105anti-parallel
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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
20 21first strand
Strand 2
E
86 88anti-parallel
Strand 3
E
68 71anti-parallel
Strand 4
E
43 45anti-parallel
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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
75 76first strand
Strand 2
E
82 83anti-parallel
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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
376 378first strand
Strand 2
E
418 421parallel
Strand 3
E
466 471parallel
Strand 4
E
351 354parallel
Strand 5
E
486 489parallel
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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
520 522first strand
Strand 2
E
567 569parallel
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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
596 600first strand
Strand 2
E
609 618anti-parallel
Strand 3
E
661 666anti-parallel
Strand 4
E
623 626parallel
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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
700 702first strand
Strand 2
E
732 736parallel
Strand 3
E
755 759parallel
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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
705 706first strand
Strand 2
E
712 713anti-parallel
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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
7 8first strand
Strand 2
F
43 46parallel
Strand 3
F
66 71anti-parallel
Strand 4
F
82 87anti-parallel
Strand 5
F
21 25anti-parallel
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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
7 8first strand
Strand 2
F
43 46parallel
Strand 3
F
66 71anti-parallel
Strand 4
F
91 92anti-parallel
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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
376 380first strand
Strand 2
F
418 422parallel
Strand 3
F
466 471parallel
Strand 4
F
350 354parallel
Strand 5
F
485 489parallel
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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
520 522first strand
Strand 2
F
567 569parallel
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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
596 603first strand
Strand 2
F
606 618anti-parallel
Strand 3
F
661 666anti-parallel
Strand 4
F
623 626parallel
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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
701 702first strand
Strand 2
F
732 736parallel
Strand 3
F
755 759parallel
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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
705 706first strand
Strand 2
F
712 713anti-parallel
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There are 7 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
21 25first strand
Strand 2
A
82 93anti-parallel
Strand 3
A
65 75anti-parallel
Strand 4
A
43 48anti-parallel
Strand 5
A
3 10parallel
Strand 6
A
104 107anti-parallel
Strand 7
A
96 98anti-parallel
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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
21 25first strand
Strand 2
A
82 93anti-parallel
Strand 3
A
110 111anti-parallel
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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
375 379first strand
Strand 2
A
417 421parallel
Strand 3
A
466 471parallel
Strand 4
A
350 354parallel
Strand 5
A
485 489parallel
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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
520 522first strand
Strand 2
A
567 569parallel
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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
596 603first strand
Strand 2
A
606 618anti-parallel
Strand 3
A
661 666anti-parallel
Strand 4
A
623 626parallel
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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
701 702first strand
Strand 2
A
733 736parallel
Strand 3
A
756 759parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il