Analysis of interatomic Contacts of Structural Units in PDB entry:
7FD6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7FD6 entry

There is 1 chain in PDB entry 7FD6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 24GLY 561
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 7FD6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 53Right-handed alpha
Helix 2
AA2
A
167 170Right-handed 310
Helix 3
AA3
A
175 179Right-handed 310
Helix 4
AA4
A
180 184Right-handed 310
Helix 5
AA5
A
201 207Right-handed 310
Helix 6
AA6
A
209 218Right-handed alpha
Helix 7
AA7
A
230 236Right-handed alpha
Helix 8
AA8
A
250 263Right-handed alpha
Helix 9
AA9
A
278 284Right-handed 310
Helix 10
AB1
A
286 304Right-handed alpha
Helix 11
AB2
A
330 354Right-handed alpha
Helix 12
AB3
A
366 371Right-handed alpha
Helix 13
AB4
A
374 379Right-handed alpha
Helix 14
AB5
A
380 382Right-handed 310
Helix 15
AB6
A
419 431Right-handed alpha
Helix 16
AB7
A
433 435Right-handed 310
Helix 17
AB8
A
458 462Right-handed 310
Helix 18
AB9
A
479 486Right-handed alpha
Helix 19
AC1
A
517 532Right-handed alpha
Helix 20
AC2
A
540 544Right-handed 310
Helix 21
AC3
A
546 556Right-handed alpha
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There are 7 sheets in PDB entry 7FD6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 31first strand
Strand 2
A
60 67anti-parallel
Strand 3
A
95 102anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 39first strand
Strand 2
A
126 131parallel
Strand 3
A
106 116anti-parallel
Strand 4
A
76 81anti-parallel
Strand 5
A
84 90anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 39first strand
Strand 2
A
126 131parallel
Strand 3
A
106 116anti-parallel
Strand 4
A
119 122anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 43first strand
Strand 2
A
54 56anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 165first strand
Strand 2
A
186 192parallel
Strand 3
A
267 273parallel
Strand 4
A
309 313parallel
Strand 5
A
358 364parallel
Strand 6
A
384 388parallel
Strand 7
A
437 442parallel
Strand 8
A
535 539parallel
Strand 9
A
159 165parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
466 467first strand
Strand 2
A
444 449anti-parallel
Strand 3
A
476 478anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
466 467first strand
Strand 2
A
444 449anti-parallel
Strand 3
A
511 514anti-parallel
Strand 4
A
501 506anti-parallel
Strand 5
A
492 496anti-parallel
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