Analysis of interatomic Contacts of Structural Units in PDB entry:
7FD8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7FD8 entry

There are 2 chains in PDB entry 7FD8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 25	ALA 827
B	ARG 25	ALA 827

There are 46 helices in PDB entry 7FD8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	65	81	Right-handed alpha
Helix 2	AA2	A	101	113	Right-handed alpha
Helix 3	AA3	A	151	163	Right-handed alpha
Helix 4	AA4	A	176	181	Right-handed 310
Helix 5	AA5	A	195	209	Right-handed alpha
Helix 6	AA6	A	221	238	Right-handed alpha
Helix 7	AA7	A	253	266	Right-handed alpha
Helix 8	AA8	A	279	293	Right-handed alpha
Helix 9	AA9	A	317	321	Right-handed 310
Helix 10	AB1	A	334	342	Right-handed alpha
Helix 11	AB2	A	354	364	Right-handed alpha
Helix 12	AB3	A	396	419	Right-handed alpha
Helix 13	AB4	A	433	444	Right-handed alpha
Helix 14	AB5	A	577	604	Right-handed alpha
Helix 15	AB6	A	607	612	Right-handed alpha
Helix 16	AB7	A	614	636	Right-handed alpha
Helix 17	AB8	A	640	671	Right-handed alpha
Helix 18	AB9	A	692	715	Right-handed alpha
Helix 19	AC1	A	736	760	Right-handed alpha
Helix 20	AC2	A	765	788	Right-handed alpha
Helix 21	AC3	A	789	795	Right-handed alpha
Helix 22	AC4	A	797	816	Right-handed alpha
Helix 23	AC5	A	818	826	Right-handed alpha
Helix 24	AC6	B	65	81	Right-handed alpha
Helix 25	AC7	B	101	113	Right-handed alpha
Helix 26	AC8	B	151	163	Right-handed alpha
Helix 27	AC9	B	176	181	Right-handed 310
Helix 28	AD1	B	195	209	Right-handed alpha
Helix 29	AD2	B	221	238	Right-handed alpha
Helix 30	AD3	B	253	266	Right-handed alpha
Helix 31	AD4	B	279	293	Right-handed alpha
Helix 32	AD5	B	317	321	Right-handed 310
Helix 33	AD6	B	334	342	Right-handed alpha
Helix 34	AD7	B	354	364	Right-handed alpha
Helix 35	AD8	B	396	419	Right-handed alpha
Helix 36	AD9	B	433	444	Right-handed alpha
Helix 37	AE1	B	577	604	Right-handed alpha
Helix 38	AE2	B	607	612	Right-handed alpha
Helix 39	AE3	B	614	636	Right-handed alpha
Helix 40	AE4	B	640	671	Right-handed alpha
Helix 41	AE5	B	692	715	Right-handed alpha
Helix 42	AE6	B	736	760	Right-handed alpha
Helix 43	AE7	B	765	788	Right-handed alpha
Helix 44	AE8	B	789	795	Right-handed alpha
Helix 45	AE9	B	797	816	Right-handed alpha
Helix 46	AF1	B	818	826	Right-handed alpha

There are 12 sheets in PDB entry 7FD8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	31	first strand
Strand 2	A	91	97	anti-parallel
Strand 3	A	35	41	parallel
Strand 4	A	143	147	parallel
Strand 5	A	169	170	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	219	first strand
Strand 2	A	241	248	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	276	first strand
Strand 2	A	301	303	parallel
Strand 3	A	324	328	parallel
Strand 4	A	466	473	anti-parallel
Strand 5	A	479	488	anti-parallel
Strand 6	A	491	494	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	446	447	first strand
Strand 2	A	453	454	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	520	523	first strand
Strand 2	A	533	536	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	719	722	first strand
Strand 2	A	730	733	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	31	first strand
Strand 2	B	91	97	anti-parallel
Strand 3	B	35	41	parallel
Strand 4	B	143	147	parallel
Strand 5	B	169	170	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	219	first strand
Strand 2	B	241	248	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	274	276	first strand
Strand 2	B	301	303	parallel
Strand 3	B	324	328	parallel
Strand 4	B	466	473	anti-parallel
Strand 5	B	479	488	anti-parallel
Strand 6	B	491	494	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	446	447	first strand
Strand 2	B	453	454	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	520	523	first strand
Strand 2	B	533	536	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	719	722	first strand
Strand 2	B	730	733	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7FD8

Analysis of interatomic Contacts of Structural Units in PDB entry:
7FD8