Analysis of interatomic Contacts of Structural Units in PDB entry:
7FDD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7FDD entry

There are 2 chains in PDB entry 7FDD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 28LYS 267
B
 ASN 28LYS 267
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 7FDD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
258 266Right-handed alpha
Helix 2
AA2
B
258 267Right-handed alpha
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There are 6 sheets in PDB entry 7FDD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 34first strand
Strand 2
A
38 42anti-parallel
Strand 3
A
52 58anti-parallel
Strand 4
A
61 67anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 79first strand
Strand 2
A
85 90anti-parallel
Strand 3
A
96 102anti-parallel
Strand 4
A
109 116anti-parallel
Strand 5
A
121 132anti-parallel
Strand 6
B
119 132anti-parallel
Strand 7
B
109 116anti-parallel
Strand 8
B
96 102anti-parallel
Strand 9
B
85 90anti-parallel
Strand 10
B
74 79anti-parallel
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There are 14 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 197first strand
Strand 2
A
179 186anti-parallel
Strand 3
A
169 176anti-parallel
Strand 4
A
160 165anti-parallel
Strand 5
A
151 155anti-parallel
Strand 6
A
138 144anti-parallel
Strand 7
A
121 132anti-parallel
Strand 8
B
119 132anti-parallel
Strand 9
B
138 144anti-parallel
Strand 10
B
150 155anti-parallel
Strand 11
B
160 165anti-parallel
Strand 12
B
169 176anti-parallel
Strand 13
B
179 186anti-parallel
Strand 14
B
191 197anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 211first strand
Strand 2
A
216 221anti-parallel
Strand 3
A
224 231anti-parallel
Strand 4
A
237 241anti-parallel
Strand 5
A
254 255anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 34first strand
Strand 2
B
38 42anti-parallel
Strand 3
B
52 58anti-parallel
Strand 4
B
61 67anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 210first strand
Strand 2
B
216 221anti-parallel
Strand 3
B
224 231anti-parallel
Strand 4
B
237 241anti-parallel
Strand 5
B
254 255anti-parallel
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