Analysis of interatomic Contacts of Structural Units in PDB entry:
7FDK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7FDK entry

There are 2 chains in PDB entry 7FDK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 19ASP 615
E
 THR 333GLY 526
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 7FDK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 53Right-handed alpha
Helix 2
AA2
A
56 79Right-handed alpha
Helix 3
AA3
A
90 101Right-handed alpha
Helix 4
AA4
A
109 129Right-handed alpha
Helix 5
AA5
A
144 148Right-handed alpha
Helix 6
AA6
A
150 155Right-handed alpha
Helix 7
AA7
A
157 194Right-handed alpha
Helix 8
AA8
A
198 205Right-handed alpha
Helix 9
AA9
A
220 231Right-handed alpha
Helix 10
AB1
A
233 252Right-handed alpha
Helix 11
AB2
A
279 283Right-handed 310
Helix 12
AB3
A
293 299Right-handed alpha
Helix 13
AB4
A
303 318Right-handed alpha
Helix 14
AB5
A
324 331Right-handed alpha
Helix 15
AB6
A
366 383Right-handed alpha
Helix 16
AB7
A
400 411Right-handed alpha
Helix 17
AB8
A
414 421Right-handed alpha
Helix 18
AB9
A
431 465Right-handed alpha
Helix 19
AC1
A
473 485Right-handed alpha
Helix 20
AC2
A
499 503Right-handed 310
Helix 21
AC3
A
513 533Right-handed alpha
Helix 22
AC4
A
548 559Right-handed alpha
Helix 23
AC5
A
565 575Right-handed alpha
Helix 24
AC6
A
582 588Right-handed alpha
Helix 25
AC7
A
588 599Right-handed alpha
Helix 26
AC8
E
337 343Right-handed alpha
Helix 27
AC9
E
365 370Right-handed alpha
Helix 28
AD1
E
383 390Right-handed alpha
Helix 29
AD2
E
403 407Right-handed 310
Helix 30
AD3
E
438 443Right-handed alpha
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There are 6 sheets in PDB entry 7FDK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 133first strand
Strand 2
A
141 143anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
487 488parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 352first strand
Strand 2
A
355 359anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
354 355first strand
Strand 2
E
394 402anti-parallel
Strand 3
E
508 516anti-parallel
Strand 4
E
431 437anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
452 454first strand
Strand 2
E
492 494anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
473 474first strand
Strand 2
E
488 489anti-parallel
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