Analysis of interatomic Contacts of Structural Units in PDB entry:
7FDM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7FDM entry

There are 4 chains in PDB entry 7FDM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 46ASN 238
B
 GLN 46ASN 238
C
 SER 184ILE 203
D
 SER 184SER 198
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 7FDM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 63Right-handed alpha
Helix 2
AA2
A
114 129Right-handed alpha
Helix 3
AA3
A
145 154Right-handed alpha
Helix 4
AA4
A
155 157Right-handed 310
Helix 5
AA5
A
163 172Right-handed alpha
Helix 6
AA6
A
180 186Right-handed alpha
Helix 7
AA7
A
189 198Right-handed alpha
Helix 8
AA8
A
224 234Right-handed alpha
Helix 9
AA9
B
48 63Right-handed alpha
Helix 10
AB1
B
114 129Right-handed alpha
Helix 11
AB2
B
145 154Right-handed alpha
Helix 12
AB3
B
163 172Right-handed alpha
Helix 13
AB4
B
180 186Right-handed alpha
Helix 14
AB5
B
189 198Right-handed alpha
Helix 15
AB6
B
224 235Right-handed alpha
Helix 16
AB7
C
185 197Right-handed alpha
Helix 17
AB8
D
185 198Right-handed alpha
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There are 2 sheets in PDB entry 7FDM. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 160first strand
Strand 2
A
87 97anti-parallel
Strand 3
A
69 78anti-parallel
Strand 4
A
212 217anti-parallel
Strand 5
A
202 207anti-parallel
Strand 6
A
175 179anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 160first strand
Strand 2
B
89 97anti-parallel
Strand 3
B
69 76anti-parallel
Strand 4
B
211 217anti-parallel
Strand 5
B
202 207anti-parallel
Strand 6
B
175 179anti-parallel
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