Analysis of interatomic Contacts of Structural Units in PDB entry:
7FDN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7FDN entry

There are 2 chains in PDB entry 7FDN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 11ALA 205
B
 ASP 11ALA 205
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 7FDN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 25Right-handed alpha
Helix 2
AA2
A
71 85Right-handed alpha
Helix 3
AA3
A
107 111Right-handed 310
Helix 4
AA4
A
112 121Right-handed alpha
Helix 5
AA5
A
130 140Right-handed alpha
Helix 6
AA6
A
147 151Right-handed 310
Helix 7
AA7
A
158 165Right-handed alpha
Helix 8
AA8
A
191 205Right-handed alpha
Helix 9
AA9
B
13 25Right-handed alpha
Helix 10
AB1
B
71 86Right-handed alpha
Helix 11
AB2
B
107 111Right-handed 310
Helix 12
AB3
B
112 122Right-handed alpha
Helix 13
AB4
B
130 140Right-handed alpha
Helix 14
AB5
B
147 151Right-handed 310
Helix 15
AB6
B
158 165Right-handed alpha
Helix 16
AB7
B
191 205Right-handed alpha
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There are 2 sheets in PDB entry 7FDN. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 127first strand
Strand 2
A
41 49anti-parallel
Strand 3
A
28 34anti-parallel
Strand 4
A
178 184anti-parallel
Strand 5
A
169 175anti-parallel
Strand 6
A
143 145anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 127first strand
Strand 2
B
41 49anti-parallel
Strand 3
B
28 34anti-parallel
Strand 4
B
178 184anti-parallel
Strand 5
B
169 175anti-parallel
Strand 6
B
143 145anti-parallel
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