Analysis of interatomic Contacts of Structural Units in PDB entry:
7FDP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7FDP entry

There are 2 chains in PDB entry 7FDP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 14	ASN 415
B	ALA 14	ASP 416

There are 34 helices in PDB entry 7FDP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	39	Right-handed alpha
Helix 2	AA2	A	45	58	Right-handed alpha
Helix 3	AA3	A	64	74	Right-handed alpha
Helix 4	AA4	A	75	77	Right-handed 310
Helix 5	AA5	A	78	91	Right-handed alpha
Helix 6	AA6	A	91	110	Right-handed alpha
Helix 7	AA7	A	113	127	Right-handed alpha
Helix 8	AA8	A	129	135	Right-handed 310
Helix 9	AA9	A	138	145	Right-handed alpha
Helix 10	AB1	A	145	166	Right-handed alpha
Helix 11	AB2	A	166	171	Right-handed alpha
Helix 12	AB3	A	173	209	Right-handed alpha
Helix 13	AB4	A	214	229	Right-handed alpha
Helix 14	AB5	A	230	244	Right-handed alpha
Helix 15	AB6	A	265	274	Right-handed alpha
Helix 16	AB7	A	275	279	Right-handed 310
Helix 17	AB8	A	397	401	Right-handed 310
Helix 18	AB9	B	29	39	Right-handed alpha
Helix 19	AC1	B	45	58	Right-handed alpha
Helix 20	AC2	B	64	74	Right-handed alpha
Helix 21	AC3	B	75	77	Right-handed 310
Helix 22	AC4	B	78	92	Right-handed alpha
Helix 23	AC5	B	92	110	Right-handed alpha
Helix 24	AC6	B	113	127	Right-handed alpha
Helix 25	AC7	B	129	135	Right-handed 310
Helix 26	AC8	B	138	145	Right-handed alpha
Helix 27	AC9	B	145	166	Right-handed alpha
Helix 28	AD1	B	166	171	Right-handed alpha
Helix 29	AD2	B	173	210	Right-handed alpha
Helix 30	AD3	B	214	229	Right-handed alpha
Helix 31	AD4	B	230	244	Right-handed alpha
Helix 32	AD5	B	265	273	Right-handed alpha
Helix 33	AD6	B	275	279	Right-handed 310
Helix 34	AD7	B	397	401	Right-handed 310

There are 10 sheets in PDB entry 7FDP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	257	first strand
Strand 2	A	406	413	anti-parallel
Strand 3	A	261	262	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	257	first strand
Strand 2	A	406	413	anti-parallel
Strand 3	A	386	394	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	288	first strand
Strand 2	A	291	292	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	327	first strand
Strand 2	A	308	318	anti-parallel
Strand 3	A	295	305	anti-parallel
Strand 4	A	332	337	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	366	370	first strand
Strand 2	A	356	361	anti-parallel
Strand 3	A	343	349	anti-parallel
Strand 4	A	377	380	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	257	first strand
Strand 2	B	406	413	anti-parallel
Strand 3	B	261	262	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	257	first strand
Strand 2	B	406	413	anti-parallel
Strand 3	B	386	394	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	287	288	first strand
Strand 2	B	291	292	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	323	327	first strand
Strand 2	B	308	318	anti-parallel
Strand 3	B	295	305	anti-parallel
Strand 4	B	332	337	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	366	370	first strand
Strand 2	B	356	361	anti-parallel
Strand 3	B	343	349	anti-parallel
Strand 4	B	377	380	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7FDP

Analysis of interatomic Contacts of Structural Units in PDB entry:
7FDP